RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 FBXO22Q8NEZ5 403 aa12.24□□□□□ -0.45
GPNMB-211ENST00000479625 MARVELD3Q96A59 401 aa12.24□□□□□ -0.45
GPNMB-211ENST00000479625 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.24□□□□□ -0.45
GPNMB-211ENST00000479625 C9orf78Q9NZ63 289 aaPredicted RBP12.24□□□□□ -0.45
GPNMB-211ENST00000479625 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.24□□□□□ -0.45
GPNMB-211ENST00000479625 FAM198AQ9UFP1 575 aa12.24□□□□□ -0.45
GPNMB-211ENST00000479625 STXBP5LQ9Y2K9 1186 aa12.24□□□□□ -0.45
GPNMB-211ENST00000479625 DAGLAQ9Y4D2 1042 aa12.24□□□□□ -0.45
GPNMB-211ENST00000479625 A0A0G2JLL6 359 aaPredicted RBP12.23□□□□□ -0.45
GPNMB-211ENST00000479625 VAMP4O75379 141 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 BMP8BP34820 402 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 IRF5Q13568 498 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 CDC42EP5Q6NZY7 148 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 HHIPL2Q6UWX4 724 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 PRRT2Q7Z6L0 340 aaPredicted RBP12.23□□□□□ -0.45
GPNMB-211ENST00000479625 CCDC84Q86UT8 332 aaPredicted RBP12.23□□□□□ -0.45
GPNMB-211ENST00000479625 ZFPM1Q8IX07 1006 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 KLHDC4Q8TBB5 520 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 PXYLP1Q8TE99 480 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 MTMR10Q9NXD2 777 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 LTBP2Q14767 1821 aa12.23□□□□□ -0.45
GPNMB-211ENST00000479625 CXCL11O14625 94 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 NBPF7P0C2Y1 421 aaPredicted RBP12.22□□□□□ -0.45
GPNMB-211ENST00000479625 MAGEA10P43363 369 aaPredicted RBP12.22□□□□□ -0.45
GPNMB-211ENST00000479625 EXOSC9Q06265 439 aaKnown RBP12.22□□□□□ -0.45
GPNMB-211ENST00000479625 TRIM32Q13049 653 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 GPR153Q6NV75 609 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 SLC4A10Q6U841 1118 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 SCYL3Q8IZE3 742 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 TDHQ8IZJ6 230 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 SMCR8Q8TEV9 937 aaPredicted RBP12.22□□□□□ -0.45
GPNMB-211ENST00000479625 BICC1Q9H694 974 aaKnown RBP12.22□□□□□ -0.45
GPNMB-211ENST00000479625 ZHX2Q9Y6X8 837 aa12.22□□□□□ -0.45
GPNMB-211ENST00000479625 RFX7Q2KHR2 1363 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 IL16Q14005 1332 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 PDE8BO95263 885 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 PRDX5P30044 214 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 CCDC27Q2M243 656 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 LRIT3Q3SXY7 679 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 CCDC184Q52MB2 194 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 ANKRD13CQ8N6S4 541 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 MRIQ9BWK5 157 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 SUGT1Q9Y2Z0 365 aa12.21□□□□□ -0.45
GPNMB-211ENST00000479625 SIPA1L1O43166 1804 aa12.21□□□□□ -0.46
GPNMB-211ENST00000479625 TRIM75PA6NK02 468 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 PHF20L1A8MW92 1017 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 PTPRAP18433 802 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 TREML2Q5T2D2 321 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 TMEM92Q6UXU6 159 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 FASTKD5Q7L8L6 764 aaKnown RBP12.2□□□□□ -0.46
GPNMB-211ENST00000479625 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.2□□□□□ -0.46
GPNMB-211ENST00000479625 ANKRD44Q8N8A2 993 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 SRCIN1Q9C0H9 1055 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 AFG3L2Q9Y4W6 797 aa12.2□□□□□ -0.46
GPNMB-211ENST00000479625 COL2A1P02458 1487 aaPredicted RBP12.2□□□□□ -0.46
GPNMB-211ENST00000479625 PFASO15067 1338 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 ALDH1L1O75891 902 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 FGFR2P21802 821 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 RABL6Q3YEC7 729 aaPredicted RBP12.19□□□□□ -0.46
GPNMB-211ENST00000479625 SH3BP5LQ7L8J4 393 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 ANKLE1Q8NAG6 615 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 COA7Q96BR5 231 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 UBE2OQ9C0C9 1292 aaKnown RBP12.19□□□□□ -0.46
GPNMB-211ENST00000479625 PICK1Q9NRD5 415 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 USP40Q9NVE5 1235 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 CDK5RAP2Q96SN8 1893 aa12.19□□□□□ -0.46
GPNMB-211ENST00000479625 KIF16BQ96L93 1317 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 HMGCRP04035 888 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 ZEB1P37275 1124 aaPredicted RBP12.18□□□□□ -0.46
GPNMB-211ENST00000479625 RGS3P49796 1198 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 PUM3Q15397 648 aaKnown RBP12.18□□□□□ -0.46
GPNMB-211ENST00000479625 GUCD1Q96NT3 240 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 NBPF3Q9H094 633 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 C11orf49Q9H6J7 331 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 AGTPBP1Q9UPW5 1226 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 SLC45A1Q9Y2W3 748 aa12.18□□□□□ -0.46
GPNMB-211ENST00000479625 SALL2Q9Y467 1007 aaPredicted RBP12.18□□□□□ -0.46
GPNMB-211ENST00000479625 UTYO14607 1347 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 RPTORQ8N122 1335 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 MUC3AQ02505 3323 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 IFIT1P09914 478 aaKnown RBP12.17□□□□□ -0.46
GPNMB-211ENST00000479625 EMP3P54852 163 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 FAM110CQ1W6H9 321 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 WDR66Q8TBY9 1149 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 TRIB2Q92519 343 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 FAM161BQ96MY7 647 aa12.17□□□□□ -0.46
GPNMB-211ENST00000479625 DDTLA6NHG4 134 aaPredicted RBP12.16□□□□□ -0.46
GPNMB-211ENST00000479625 FAM196BA6NMK8 535 aa12.16□□□□□ -0.46
GPNMB-211ENST00000479625 CAPN2P17655 700 aa12.16□□□□□ -0.46
GPNMB-211ENST00000479625 MDM2Q00987 491 aaPredicted RBP12.16□□□□□ -0.46
GPNMB-211ENST00000479625 ZSCAN29Q8IWY8 852 aaPredicted RBP12.16□□□□□ -0.46
GPNMB-211ENST00000479625 HMX1Q9NP08 348 aaPredicted RBP12.16□□□□□ -0.46
GPNMB-211ENST00000479625 LRRFIP2Q9Y608 721 aaKnown RBP12.16□□□□□ -0.46
GPNMB-211ENST00000479625 PEX10O60683 326 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 LDHBP07195 334 aaKnown RBP12.15□□□□□ -0.46
GPNMB-211ENST00000479625 SLC5A1P13866 664 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 HOXB3P14651 431 aaPredicted RBP12.15□□□□□ -0.46
GPNMB-211ENST00000479625 PICALMQ13492 652 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 DDX4Q9NQI0 724 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms