RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KIAA0355O15063 1070 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 FRAT2O75474 233 aaPredicted RBP10.26□□□□□ -0.77
USP54-211ENST00000474929 TAF5LO75529 589 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 PPP2R1AP30153 589 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 RIPK4P57078 832 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 IRX3P78415 501 aaPredicted RBP10.26□□□□□ -0.77
USP54-211ENST00000474929 IFIT5Q13325 482 aaKnown RBP10.26□□□□□ -0.77
USP54-211ENST00000474929 UBE4AQ14139 1066 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 ADGRE1Q14246 886 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 PSRC1Q6PGN9 363 aaPredicted RBP10.26□□□□□ -0.77
USP54-211ENST00000474929 ERMP1Q7Z2K6 904 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 VPS37DQ86XT2 251 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 GPRC5AQ8NFJ5 357 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 JARID2Q92833 1246 aaPredicted RBP10.26□□□□□ -0.77
USP54-211ENST00000474929 FBXL18Q96ME1 805 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 UIMC1Q96RL1 719 aa10.26□□□□□ -0.77
USP54-211ENST00000474929 TRIM43BA6NCK2 446 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 CSF1RP07333 972 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 CNGA1P29973 690 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 TFF2Q03403 129 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 PPIGQ13427 754 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP54-211ENST00000474929 CNGB1Q14028 1251 aaPredicted RBP10.25□□□□□ -0.77
USP54-211ENST00000474929 APOBEC3HQ6NTF7 200 aaKnown RBP10.25□□□□□ -0.77
USP54-211ENST00000474929 UBE3BQ7Z3V4 1068 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 MICALL1Q8N3F8 863 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 TRIM43Q96BQ3 446 aaPredicted RBP10.25□□□□□ -0.77
USP54-211ENST00000474929 PRRX2Q99811 253 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 ASCC2Q9H1I8 757 aaPredicted RBP10.25□□□□□ -0.77
USP54-211ENST00000474929 XIRP2A4UGR9 3374 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 PHIPQ8WWQ0 1821 aa10.25□□□□□ -0.77
USP54-211ENST00000474929 MAP2K5Q13163 448 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 KRT24Q2M2I5 525 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 TREML2Q5T2D2 321 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 PLEKHH3Q7Z736 793 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 USP6NLQ92738 828 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 MYH16Q9H6N6 1097 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.24□□□□□ -0.77
USP54-211ENST00000474929 ATRNL1Q5VV63 1379 aa10.24□□□□□ -0.77
USP54-211ENST00000474929 PLXNA1Q9UIW2 1896 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 PHF20L1A8MW92 1017 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 H7C1W4 665 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 SNAP23O00161 211 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 TLL1O43897 1013 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 CAVIN4Q5BKX8 364 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 TAF7LQ5H9L4 462 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 DUSP27Q5VZP5 1158 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 GPR142Q7Z601 462 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 HLA-CQ95604 372 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 PHAXQ9H814 394 aaKnown RBP10.23□□□□□ -0.77
USP54-211ENST00000474929 MAP3K2Q9Y2U5 619 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 ZNF521Q96K83 1311 aa10.23□□□□□ -0.77
USP54-211ENST00000474929 POU3F3P20264 500 aaPredicted RBP10.22□□□□□ -0.77
USP54-211ENST00000474929 ITGB8P26012 769 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 EPHB4P54760 987 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 PTPN5P54829 565 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 CCNA1P78396 465 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 TLE2Q04725 743 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 TCP10Q12799 353 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 CCL14Q16627 93 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 MORN1Q5T089 497 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 KSR2Q6VAB6 950 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 SH3RF1Q7Z6J0 888 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 ZNF280CQ8ND82 737 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 AS3MTQ9HBK9 375 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 CLSPNQ9HAW4 1339 aa10.22□□□□□ -0.77
USP54-211ENST00000474929 NEURL1BA8MQ27 555 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 ENTPD3O75355 529 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 IGKV5-2P06315 115 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 GYG1P46976 350 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 ATP2B2Q01814 1243 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 CHAF1AQ13111 956 aaPredicted RBP10.21□□□□□ -0.77
USP54-211ENST00000474929 GCKRQ14397 625 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 SH3D19Q5HYK7 790 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 GJC2Q5T442 439 aaPredicted RBP10.21□□□□□ -0.77
USP54-211ENST00000474929 RASIP1Q5U651 963 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 LDHAL6AQ6ZMR3 332 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 SLC44A5Q8NCS7 719 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 EDC3Q96F86 508 aaKnown RBP10.21□□□□□ -0.77
USP54-211ENST00000474929 FAM84BQ96KN1 310 aaPredicted RBP10.21□□□□□ -0.77
USP54-211ENST00000474929 MFSD14AQ96MC6 490 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.21□□□□□ -0.77
USP54-211ENST00000474929 CNNM1Q9NRU3 951 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 TMEM39AQ9NV64 488 aa10.21□□□□□ -0.77
USP54-211ENST00000474929 LAS1LQ9Y4W2 734 aaKnown RBP10.21□□□□□ -0.77
USP54-211ENST00000474929 CACNA1BQ00975 2339 aa10.21□□□□□ -0.78
USP54-211ENST00000474929 DCDC2CA8MYV0 355 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 HOXC6P09630 235 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 SLC5A1P13866 664 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 HOXA7P31268 230 aaPredicted RBP10.2□□□□□ -0.78
USP54-211ENST00000474929 PBX2P40425 430 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 HMGCS2P54868 508 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 HERVK_113P62684 666 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 ERVK-9P63128 1117 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 ERVK-24P63145 666 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 MAP3K10Q02779 954 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 CCDC57Q2TAC2 916 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 PPP2R2DQ66LE6 453 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 MROH7Q68CQ1 1323 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 TMEM199Q8N511 208 aa10.2□□□□□ -0.78
USP54-211ENST00000474929 TOX2Q96NM4 488 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms