RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 MYL10Q9BUA6 226 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 DDX19AQ9NUU7 478 aaKnown RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ROBO3Q96MS0 1386 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 FAM205AQ6ZU69 1335 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 PPEF1O14829 653 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-222ENST00000474655 GRIK5Q16478 980 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 OTUD7BQ6GQQ9 843 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 NBPF11Q86T75 865 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 FANCBQ8NB91 859 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 POLR3EQ9NVU0 708 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 JAG2Q9Y219 1238 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 MROH7-TTC4A0A0A0MT08 1334 aa14.23□□□□□ -0.13
SYNE1-222ENST00000474655 BAG3O95817 575 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 SLC3A2P08195 630 aaKnown RBP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 PDE6BP35913 854 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 SSRP1Q08945 709 aaKnown RBP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 RTN1Q16799 776 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 MYSM1Q5VVJ2 828 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 IQCA1Q86XH1 822 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 TBC1D22AQ8WUA7 517 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 WASF1Q92558 559 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 PHKBQ93100 1093 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 PDLIM2Q96JY6 352 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 RTFDC1Q9BY42 306 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 YEATS4O95619 227 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 U2AF2P26368 475 aaKnown RBP eCLIP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 ALDH1B1P30837 517 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 C12orf60Q5U649 245 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 KRT40Q6A162 431 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 CCDC144CPQ8IYA2 1237 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 CRACR2BQ8N4Y2 399 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 ANP32BQ92688 251 aaKnown RBP14.22□□□□□ -0.13
SYNE1-222ENST00000474655 AIFM3Q96NN9 605 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 NUP62CLQ9H1M0 184 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 GJB4Q9NTQ9 266 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 DACT1Q9NYF0 836 aa14.22□□□□□ -0.13
SYNE1-222ENST00000474655 GPR75-ASB3A0A0A6YYF3 556 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 KIF28PB7ZC32 967 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 PDE4BQ07343 736 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 UVSSAQ2YD98 709 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 STK11IPQ8N1F8 1099 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 LINC00301Q8NCQ3 95 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 FTOQ9C0B1 505 aaKnown RBP eCLIP14.21□□□□□ -0.13
SYNE1-222ENST00000474655 COA1Q9GZY4 146 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 PARP3Q9Y6F1 533 aa14.21□□□□□ -0.13
SYNE1-222ENST00000474655 MYH1P12882 1939 aa14.21□□□□□ -0.14
SYNE1-222ENST00000474655 GAKO14976 1311 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 MMP10P09238 476 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 CALM1P0DP23 149 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 CALM2P0DP24 149 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 CALM3P0DP25 149 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 TROAPQ12815 778 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 DIXDC1Q155Q3 683 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 SH3RF3Q8TEJ3 882 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-222ENST00000474655 RNF26Q9BY78 433 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-222ENST00000474655 CLSTN2Q9H4D0 955 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 SUGT1Q9Y2Z0 365 aa14.2□□□□□ -0.14
SYNE1-222ENST00000474655 NR1I2O75469 434 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 DDAH1O94760 285 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 DEXIO95424 95 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 POLR3DP05423 398 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 EVX2Q03828 476 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 FUT2Q10981 343 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 IFIT1BQ5T764 474 aaKnown RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 ADALQ6DHV7 355 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 SLF2Q8IX21 1173 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 TRIM22Q8IYM9 498 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 BICD2Q8TD16 824 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 KCNG4Q8TDN1 519 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 MASTLQ96GX5 879 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 SLC26A6Q9BXS9 759 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 MCM9Q9NXL9 1143 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 RGS17Q9UGC6 210 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 A0A1W2PQ27 194 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 A0A1W2PQ64 194 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 A0A1W2PQD8 194 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 C6orf229H3BNL8 230 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 PRDM1O75626 825 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 USP17L8P0C7I0 530 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 CYP2D6P10635 497 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 PLCG2P16885 1265 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 USP5P45974 858 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 CEBPZQ03701 1054 aaKnown RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 MAP3K11Q16584 847 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 MFSD14BQ5SR56 506 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 ENGASEQ8NFI3 743 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 ANKS1AQ92625 1134 aa14.19□□□□□ -0.14
SYNE1-222ENST00000474655 NOL10Q9BSC4 688 aaKnown RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 RBM28Q9NW13 759 aaKnown RBP14.19□□□□□ -0.14
SYNE1-222ENST00000474655 SNW1Q13573 536 aaKnown RBP14.18□□□□□ -0.14
SYNE1-222ENST00000474655 TRIM29Q14134 588 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 TPRNQ4KMQ1 711 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 CATIPQ7Z7H3 387 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 MPNDQ8N594 471 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 TNMDQ9H2S6 317 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 PCDHA7Q9UN72 937 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 CLIC4Q9Y696 253 aa14.18□□□□□ -0.14
SYNE1-222ENST00000474655 MMP1P03956 469 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 CCDC192P0DO97 292 aa14.17□□□□□ -0.14
SYNE1-222ENST00000474655 GUCY1A2P33402 732 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms