RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 YY1P25490 414 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 NCBP1Q09161 790 aaKnown RBP9.96□□□□□ -0.81
COL6A3-210ENST00000473258 KCTD16Q68DU8 428 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 FAM43BQ6ZT52 329 aaPredicted RBP9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SNX29Q8TEQ0 813 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SPC25Q9HBM1 224 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 GOLGA8QA0A0J9YX86 632 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 GOLGA8OA6NCC3 632 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 GOLGA8NF8WBI6 632 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 KRT15P19012 456 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 AMPD3Q01432 767 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 CCDC144BQ3MJ40 725 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 TMTC1Q8IUR5 882 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 CEP19Q96LK0 163 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 ZBED2Q9BTP6 218 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 CBX8Q9HC52 389 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 INTS9Q9NV88 658 aaKnown RBP9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SCHIP1Q9P0W5 487 aaPredicted RBP9.96□□□□□ -0.81
COL6A3-210ENST00000473258 MCM8Q9UJA3 840 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 ZNF148Q9UQR1 794 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 A0A1B0GW55 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L2P0CJ85 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L3P0CJ86 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L4P0CJ87 422 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L5P0CJ88 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L6P0CJ89 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4L7P0CJ90 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 SERPINB3P29508 390 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 PAPOLAP51003 745 aaKnown RBP9.96□□□□□ -0.82
COL6A3-210ENST00000473258 MRPS35P82673 323 aaKnown RBP9.96□□□□□ -0.82
COL6A3-210ENST00000473258 TRIM14Q14142 442 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 CCDC89Q8N998 374 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 ST13P5Q8NFI4 369 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-210ENST00000473258 RGL1Q9NZL6 768 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 DUX4Q9UBX2 424 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 COPG1Q9Y678 874 aaKnown RBP9.96□□□□□ -0.82
COL6A3-210ENST00000473258 TMEM110-MUSTN1A8MSY1 372 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 ADCY3O60266 1144 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 TUBB6Q9BUF5 446 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 RTL1A6NKG5 1358 aa9.96□□□□□ -0.82
COL6A3-210ENST00000473258 GOLGA8IPA6NC78 632 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 STAT2P52630 851 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 MUM1L1Q5H9M0 696 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 STK26Q9P289 416 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 TSKSQ9UJT2 592 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 RWDD3Q9Y3V2 267 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 SRGAP1Q7Z6B7 1085 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 VPS37DQ86XT2 251 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 PAPOLBQ9NRJ5 636 aaKnown RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 TMOD2Q9NZR1 351 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 EIF4E1BA6NMX2 242 aaKnown RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 GUCY2FP51841 1108 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 UAP1Q16222 522 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 CWF19L2Q2TBE0 894 aaKnown RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 IGSF22Q8N9C0 903 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 TEKT4Q8WW24 435 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 P3H4Q92791 437 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 FTOQ9C0B1 505 aaKnown RBP eCLIP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 BSDC1Q9NW68 430 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 ATP6V0A2Q9Y487 856 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 PSDA5PKW4 1024 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-210ENST00000473258 PLCB3Q01970 1234 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 UBXN1Q04323 297 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 FBXW10Q5XX13 1052 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 LRRC8CQ8TDW0 803 aa9.95□□□□□ -0.82
COL6A3-210ENST00000473258 CCDC169A6NNP5 214 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 PSMA7O14818 248 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 ZBTB41Q5SVQ8 909 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 SPDYE1Q8NFV5 336 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 RNF217Q8TC41 542 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TBC1D5Q92609 795 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 THAP11Q96EK4 314 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 CHMP2BQ9UQN3 213 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 U3KPZ7 1027 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 DEAF1O75398 565 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 MCF2P10911 925 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 LMNB1P20700 586 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 CCT4P50991 539 aaKnown RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 LRMPQ12912 555 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 KBTBD12Q3ZCT8 623 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TRAF7Q6Q0C0 670 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TRIM31Q9BZY9 425 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TRPC5Q9UL62 973 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 PYCARDQ9ULZ3 195 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TTC41PQ6P2S7 1318 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 EEF1B2P24534 225 aaKnown RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 AMPHP49418 695 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 FANCCQ00597 558 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 STX3Q13277 289 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TMC5Q6UXY8 1006 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 OPTNQ96CV9 577 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 INTS4Q96HW7 963 aaKnown RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 CLMNQ96JQ2 1002 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 NACAP1Q9BZK3 213 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 TSPYL4Q9UJ04 414 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 MSH2P43246 934 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 GRAMD1BQ3KR37 738 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 DDX42Q86XP3 938 aaKnown RBP eCLIP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 KLHL7Q8IXQ5 586 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 SDCCAG3Q96C92 435 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms