RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 RBM5P52756 815 aaKnown RBP eCLIP11.8□□□□□ -0.52
SF3A1-207ENST00000471342 PICALMQ13492 652 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 AGXT2Q9BYV1 514 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 DEFB129Q9H1M3 183 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 SENP2Q9HC62 589 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 IL17RBQ9NRM6 502 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 MCM9Q9NXL9 1143 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 ECM29Q5VYK3 1845 aa11.8□□□□□ -0.52
SF3A1-207ENST00000471342 PAPPA2Q9BXP8 1791 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 YY1P25490 414 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 CDK8P49336 464 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 ANAPC15P60006 121 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 ST3GAL1Q11201 340 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 SLC4A8Q2Y0W8 1093 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 TM6SF1Q9BZW5 370 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 ARPP21Q9UBL0 812 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-207ENST00000471342 ZNF112Q9UJU3 913 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 FZD1Q9UP38 647 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 SCN4AP35499 1836 aa11.79□□□□□ -0.52
SF3A1-207ENST00000471342 BAZ2AQ9UIF9 1905 aaKnown RBP11.78□□□□□ -0.52
SF3A1-207ENST00000471342 VEGFAP15692 232 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-207ENST00000471342 USP5P45974 858 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 SEC23AQ15436 765 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 AKNAD1Q5T1N1 836 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 CASC1Q6TDU7 716 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 FBXL16Q8N461 479 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 IGDCC4Q8TDY8 1250 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 GLIS2Q9BZE0 524 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-207ENST00000471342 NAPBQ9H115 298 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 ZSWIM5Q9P217 1185 aa11.78□□□□□ -0.52
SF3A1-207ENST00000471342 LAMA4Q16363 1823 aa11.77□□□□□ -0.52
SF3A1-207ENST00000471342 ZNF213O14771 459 aa11.77□□□□□ -0.53
SF3A1-207ENST00000471342 USP2O75604 605 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-207ENST00000471342 PRDM1O75626 825 aa11.77□□□□□ -0.53
SF3A1-207ENST00000471342 TOB2Q14106 344 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-207ENST00000471342 KIAA1211Q6ZU35 1233 aa11.77□□□□□ -0.53
SF3A1-207ENST00000471342 FOXP4Q8IVH2 680 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-207ENST00000471342 ALDH8A1Q9H2A2 487 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-207ENST00000471342 DHX36Q9H2U1 1008 aaKnown RBP11.77□□□□□ -0.53
SF3A1-207ENST00000471342 CTNNA3Q9UI47 895 aa11.77□□□□□ -0.53
SF3A1-207ENST00000471342 IQCA1LA6NCM1 817 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 MINDY4BA8MYZ0 360 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 TRAF5O00463 557 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 NMT2O60551 498 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 APPP05067 770 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 TDO2P48775 406 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 EVCP57679 992 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 CST9Q5W186 159 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 MAP1SQ66K74 1059 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-207ENST00000471342 USP48Q86UV5 1035 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 ANKS1AQ92625 1134 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 TCEANC2Q96MN5 208 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 VEZTQ9HBM0 779 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-207ENST00000471342 PI4KBQ9UBF8 816 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 PLIN4Q96Q06 1357 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 NAV1Q8NEY1 1877 aa11.76□□□□□ -0.53
SF3A1-207ENST00000471342 GREB1LQ9C091 1923 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-207ENST00000471342 B4E1Z4 1266 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 AKR1B1P15121 316 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 RPS6KB1P23443 525 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 LMOD1P29536 600 aaPredicted RBP11.75□□□□□ -0.53
SF3A1-207ENST00000471342 MAP3K11Q16584 847 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 IMMTQ16891 758 aaKnown RBP11.75□□□□□ -0.53
SF3A1-207ENST00000471342 SLC35G1Q2M3R5 365 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 CHST3Q7LGC8 479 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 UPF3BQ9BZI7 483 aaKnown RBP11.75□□□□□ -0.53
SF3A1-207ENST00000471342 NACAP1Q9BZK3 213 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 SERPINB13Q9UIV8 391 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 PPP2R3BQ9Y5P8 575 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 PASKQ96RG2 1323 aa11.75□□□□□ -0.53
SF3A1-207ENST00000471342 FAM47AQ5JRC9 791 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 MOB2Q70IA6 237 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 RUFY3Q7L099 469 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 MIGA2Q7L4E1 593 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 TTC6Q86TZ1 520 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 PNMA8AQ86V59 439 aaPredicted RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 LDHDQ86WU2 507 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 CLEC10AQ8IUN9 316 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 APOBEC3FQ8IUX4 373 aaKnown RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 STK11IPQ8N1F8 1099 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 NEDD1Q8NHV4 660 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 ZNF526Q8TF50 670 aaPredicted RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 CDCA5Q96FF9 252 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 JAKMIP1Q96N16 626 aaKnown RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 NEK1Q96PY6 1258 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 CSRNP1Q96S65 589 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 FAM217BQ9NTX9 383 aaPredicted RBP11.74□□□□□ -0.53
SF3A1-207ENST00000471342 TCP11L1Q9NUJ3 509 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 BRPF3Q9ULD4 1205 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 LAMB1P07942 1786 aa11.74□□□□□ -0.53
SF3A1-207ENST00000471342 A0A1W2PRG0 241 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 SH2B2O14492 632 aaPredicted RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 KDM4AO75164 1064 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 LARGE1O95461 756 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 POLR3DP05423 398 aaPredicted RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 PCP11498 1178 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms