RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 PDHBP11177 359 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 ATP1A2P50993 1020 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 HDGFP51858 240 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 RWDD2BP57060 319 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 INHBEP58166 350 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 PIP4K2BP78356 416 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 DDR1Q08345 913 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 PPFIA1Q13136 1202 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 PDCLQ13371 301 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 MTF1Q14872 753 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 CCDC181Q5TID7 509 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 NOA1Q8NC60 698 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 ATRIPQ8WXE1 791 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 TATDN2Q93075 761 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 TBC1D31Q96DN5 1066 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 ZNF396Q96N95 335 aaPredicted RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 KIF24Q5T7B8 1368 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 GOLGA6L7A0A1B0GV03 622 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 TTC36A6NLP5 189 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 TMCO5BA8MYB1 307 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 EIF3HO15372 352 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS50-210ENST00000471188 EPB41L2O43491 1005 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 EIF2S2P20042 333 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 IFT88Q13099 833 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 RESTQ13127 1097 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 SF3B2Q13435 895 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 FKBP15Q5T1M5 1219 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 CREB3L3Q68CJ9 461 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 NCAPH2Q6IBW4 605 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 OLFM4Q6UX06 510 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 MSANTD4Q8NCY6 345 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 CCDC26Q8TAB7 109 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 KCNB2Q92953 911 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 SLC4A5Q9BY07 1137 aa4.79□□□□□ -1.64
VPS50-210ENST00000471188 MRPL44Q9H9J2 332 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 DDX20Q9UHI6 824 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 G3BP2Q9UN86 482 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 SETD1BQ9UPS6 1966 aaKnown RBP4.79□□□□□ -1.64
VPS50-210ENST00000471188 NBPF26B4DH59 902 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 STX10O60499 249 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 TUBBP07437 444 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CCT4P50991 539 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 NDUFA8P51970 172 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 VSTM4Q8IW00 320 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 RPUSD2Q8IZ73 545 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 SLC35F6Q8N357 371 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CAGE1Q8TC20 777 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 NOC3LQ8WTT2 800 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 NUP133Q8WUM0 1156 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 LRRC2Q9BYS8 371 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 YIPF3Q9GZM5 350 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 STAP2Q9UGK3 403 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 HPCAL4Q9UM19 191 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 SOS1Q07889 1333 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 ARHGEF5Q12774 1597 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 VWDEQ8N2E2 1590 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CEP170BQ9Y4F5 1589 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 SOWAHDA6NJG2 315 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 KIF3BO15066 747 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 PRPF6O94906 941 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 CLSTN1O94985 981 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 SNUPNO95149 360 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 NLRP12P59046 1061 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 MYL5Q02045 173 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 COL9A3Q14050 684 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 KCNB1Q14721 858 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 NUTM2DQ5VT03 806 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 G2E3Q7L622 706 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 AMOTL1Q8IY63 956 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 SMARCC2Q8TAQ2 1214 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CAPZA3Q96KX2 299 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CDC5LQ99459 802 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 SLC40A1Q9NP59 571 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 RCOR1Q9UKL0 485 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 FANCAO15360 1455 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 A0A0U1RQJ8 604 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 POLR3DP05423 398 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 CDC25CP30307 473 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 MRPL12P52815 198 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 PPP4CP60510 307 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 TUBB4BP68371 445 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 TRAF1Q13077 416 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 ZC3H12AQ5D1E8 599 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 KCTD16Q68DU8 428 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 CCDC121Q6ZUS5 278 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 PARP9Q8IXQ6 854 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 CCDC13Q8IYE1 715 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 MSL3Q8N5Y2 521 aaKnown RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 COG1Q8WTW3 980 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 NAPGQ99747 312 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 TM6SF1Q9BZW5 370 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 NPDC1Q9NQX5 325 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 BSDC1Q9NW68 430 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 BAIAP2L1Q9UHR4 511 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 PCDHA7Q9UN72 937 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 RIPOR2Q9Y4F9 1068 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 ARIH1Q9Y4X5 557 aaPredicted RBP4.78□□□□□ -1.64
VPS50-210ENST00000471188 SALL3Q9BXA9 1300 aa4.78□□□□□ -1.64
VPS50-210ENST00000471188 NWD1Q149M9 1564 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms