RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 TNPO2O14787 897 aaKnown RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 FARP2O94887 1054 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 MAP4K4O95819 1239 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 SLURP2P0DP57 97 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 TIMM10P62072 90 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 MECOMQ03112 1051 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 PICALMQ13492 652 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 AAMPQ13685 434 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 FAM110CQ1W6H9 321 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 TMEM57Q8N5G2 664 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 PROCA1Q8NCQ7 364 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 ZNF384Q8TF68 577 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 XAGE2Q96GT9 111 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 CRBNQ96SW2 442 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 OSBPL5Q9H0X9 879 aaPredicted RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 CHMP4BQ9H444 224 aaKnown RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 RBM27Q9P2N5 1060 aaKnown RBP11.16□□□□□ -0.62
SF3A1-206ENST00000471037 DDX19BQ9UMR2 479 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 COG6Q9Y2V7 657 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 NR2E3Q9Y5X4 410 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 LOC285556D6RIA3 1793 aa11.16□□□□□ -0.62
SF3A1-206ENST00000471037 SRGAP3O43295 1099 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 INHAP05111 366 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 GNAI3P08754 354 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 ELNP15502 786 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 TFCP2Q12800 502 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 ERICH6Q7L0X2 663 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 ITPRIPQ8IWB1 547 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 NSUN4Q96CB9 384 aaKnown RBP11.15□□□□□ -0.62
SF3A1-206ENST00000471037 TBC1D2Q9BYX2 928 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 PAK6Q9NQU5 681 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-206ENST00000471037 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-206ENST00000471037 PNMA3Q9UL41 463 aa11.15□□□□□ -0.62
SF3A1-206ENST00000471037 RANBP2P49792 3224 aaKnown RBP11.14□□□□□ -0.63
SF3A1-206ENST00000471037 A0A1W2PPC1 479 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 ZBTB7BO15156 539 aaPredicted RBP11.14□□□□□ -0.63
SF3A1-206ENST00000471037 LDHCP07864 332 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 ARID4AP29374 1257 aaPredicted RBP11.14□□□□□ -0.63
SF3A1-206ENST00000471037 GSTO1P78417 241 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 TREML2Q5T2D2 321 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 CCDC84Q86UT8 332 aaPredicted RBP11.14□□□□□ -0.63
SF3A1-206ENST00000471037 EXOC6Q8TAG9 804 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 COA7Q96BR5 231 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 CRISPLD2Q9H0B8 497 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.14□□□□□ -0.63
SF3A1-206ENST00000471037 HMG20BQ9P0W2 317 aa11.14□□□□□ -0.63
SF3A1-206ENST00000471037 SZT2Q5T011 3432 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 CAP2P40123 477 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 GCLCP48506 637 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-206ENST00000471037 SH3D19Q5HYK7 790 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 ANKRD13CQ8N6S4 541 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 SPATA5Q8NB90 893 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 ZNF280CQ8ND82 737 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 DEFB118Q96PH6 123 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 GTF3C3Q9Y5Q9 886 aa11.13□□□□□ -0.63
SF3A1-206ENST00000471037 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-206ENST00000471037 FAM196BA6NMK8 535 aa11.12□□□□□ -0.63
SF3A1-206ENST00000471037 SPP2Q13103 211 aa11.12□□□□□ -0.63
SF3A1-206ENST00000471037 PABPC4Q13310 644 aaKnown RBP eCLIP11.12□□□□□ -0.63
SF3A1-206ENST00000471037 PI16Q6UXB8 463 aa11.12□□□□□ -0.63
SF3A1-206ENST00000471037 NEUROD6Q96NK8 337 aa11.12□□□□□ -0.63
SF3A1-206ENST00000471037 HERC5Q9UII4 1024 aaKnown RBP11.12□□□□□ -0.63
SF3A1-206ENST00000471037 ATAD5Q96QE3 1844 aa11.12□□□□□ -0.63
SF3A1-206ENST00000471037 MAST2Q6P0Q8 1798 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 USP17L5A8MUK1 530 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 EVI5O60447 810 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 TFRCP02786 760 aaKnown RBP11.11□□□□□ -0.63
SF3A1-206ENST00000471037 HMGCRP04035 888 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 MCAMP43121 646 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 HMGCS2P54868 508 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 RRP1BQ14684 758 aaKnown RBP11.11□□□□□ -0.63
SF3A1-206ENST00000471037 TBC1D9Q6ZT07 1266 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 ANKLE1Q8NAG6 615 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.11□□□□□ -0.63
SF3A1-206ENST00000471037 DHX36Q9H2U1 1008 aaKnown RBP11.11□□□□□ -0.63
SF3A1-206ENST00000471037 AS3MTQ9HBK9 375 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 RAI14Q9P0K7 980 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 MORF4L1Q9UBU8 362 aa11.11□□□□□ -0.63
SF3A1-206ENST00000471037 SIPA1L1O43166 1804 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 UQCRFS1P1P0C7P4 283 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 GORABQ5T7V8 394 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 NECAB2Q7Z6G3 386 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 TEX11Q8IYF3 940 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
SF3A1-206ENST00000471037 WDR18Q9BV38 432 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 ASCC2Q9H1I8 757 aaPredicted RBP11.1□□□□□ -0.63
SF3A1-206ENST00000471037 ZBTB40Q9NUA8 1239 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 GJD2Q9UKL4 321 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 TAOK2Q9UL54 1235 aa11.1□□□□□ -0.63
SF3A1-206ENST00000471037 RPTORQ8N122 1335 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 PNMA6EA0A0J9YXQ4 647 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 IGSF3O75054 1194 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 GNAI2P04899 355 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 ASNSP08243 561 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 PLCG2P16885 1265 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 HOXA7P31268 230 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-206ENST00000471037 BACE1P56817 501 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 METTL16Q86W50 562 aaKnown RBP11.09□□□□□ -0.63
SF3A1-206ENST00000471037 GPR108Q9NPR9 543 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 GINM1Q9NU53 330 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms