RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 PPIP5K2O43314 1243 aa21.25■□□□□ 0.99
SMC4-211ENST00000469858 PDE4BQ07343 736 aa21.25■□□□□ 0.99
SMC4-211ENST00000469858 MYL10Q9BUA6 226 aa21.25■□□□□ 0.99
SMC4-211ENST00000469858 SAP30BPQ9UHR5 308 aaKnown RBP21.25■□□□□ 0.99
SMC4-211ENST00000469858 KIF3AQ9Y496 699 aa21.25■□□□□ 0.99
SMC4-211ENST00000469858 ORC4O43929 436 aa21.24■□□□□ 0.99
SMC4-211ENST00000469858 STRIP1Q5VSL9 837 aa21.24■□□□□ 0.99
SMC4-211ENST00000469858 CCDC144CPQ8IYA2 1237 aa21.24■□□□□ 0.99
SMC4-211ENST00000469858 ATP6V1DQ9Y5K8 247 aa21.24■□□□□ 0.99
SMC4-211ENST00000469858 TNKSO95271 1327 aa21.24■□□□□ 0.99
SMC4-211ENST00000469858 FLT1P17948 1338 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 PRPF40AO75400 957 aaKnown RBP21.23■□□□□ 0.99
SMC4-211ENST00000469858 GRIPAP1Q4V328 841 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 RTKN2Q8IZC4 609 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 LMBRD1Q9NUN5 540 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 USP17L3A6NCW0 530 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 USP17L4A6NCW7 530 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 GOLGA8AA7E2F4 631 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 H3BQV1 296 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 POLR3DP05423 398 aaPredicted RBP21.23■□□□□ 0.99
SMC4-211ENST00000469858 FOSBP53539 338 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 DACT2Q5SW24 774 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 IFFO2Q5TF58 517 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 SYNE3Q6ZMZ3 975 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 USP17L1Q7RTZ2 530 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 FERMT3Q86UX7 667 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 IQCA1Q86XH1 822 aa21.23■□□□□ 0.99
SMC4-211ENST00000469858 ADD1P35611 737 aaKnown RBP21.22■□□□□ 0.99
SMC4-211ENST00000469858 TMTC2Q8N394 836 aa21.22■□□□□ 0.99
SMC4-211ENST00000469858 DYNLL2Q96FJ2 89 aa21.22■□□□□ 0.99
SMC4-211ENST00000469858 ZSCAN10Q96SZ4 725 aaPredicted RBP21.22■□□□□ 0.99
SMC4-211ENST00000469858 ROBO3Q96MS0 1386 aa21.22■□□□□ 0.99
SMC4-211ENST00000469858 CDC27P30260 824 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 TGFB2P61812 414 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 SEC23AQ15436 765 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 SKOR2Q2VWA4 1001 aaPredicted RBP21.21■□□□□ 0.99
SMC4-211ENST00000469858 KIAA0825Q8IV33 1275 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 UPF1Q92900 1129 aaKnown RBP eCLIP21.21■□□□□ 0.991e-11■■■■□ 26.2
SMC4-211ENST00000469858 TEKT1Q969V4 418 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 PPP1R1BQ9UD71 204 aaPredicted RBP21.21■□□□□ 0.99
SMC4-211ENST00000469858 ECM29Q5VYK3 1845 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 FDPSP14324 419 aaKnown RBP21.21■□□□□ 0.99
SMC4-211ENST00000469858 PLCD1P51178 756 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 FKBP1AP62942 108 aaKnown RBP21.21■□□□□ 0.99
SMC4-211ENST00000469858 FAM47AQ5JRC9 791 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 ENAHQ8N8S7 591 aaPredicted RBP21.21■□□□□ 0.99
SMC4-211ENST00000469858 PIM2Q9P1W9 311 aa21.21■□□□□ 0.99
SMC4-211ENST00000469858 BRCA1P38398 1863 aaKnown RBP21.2■□□□□ 0.98
SMC4-211ENST00000469858 PSME4Q14997 1843 aa21.2■□□□□ 0.98
SMC4-211ENST00000469858 HHIPL2Q6UWX4 724 aa21.2■□□□□ 0.98
SMC4-211ENST00000469858 PSMD1Q99460 953 aa21.2■□□□□ 0.98
SMC4-211ENST00000469858 GDPD2Q9HCC8 539 aa21.2■□□□□ 0.98
SMC4-211ENST00000469858 ORC3Q9UBD5 711 aaPredicted RBP21.2■□□□□ 0.98
SMC4-211ENST00000469858 TSPY2A6NKD2 308 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 CRKP46108 304 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 CPLX2Q6PUV4 134 aaKnown RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 ZNF654Q8IZM8 581 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 GZF1Q9H116 711 aaPredicted RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 CNPY2Q9Y2B0 182 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 DDX49Q9Y6V7 483 aaKnown RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 YDJCA8MPS7 323 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 CDKL5O76039 1030 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 NCLP19338 710 aaKnown RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 PICALMQ13492 652 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 IFIT1BQ5T764 474 aaKnown RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 KLHL34Q8N239 644 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 MKNK2Q9HBH9 465 aa21.19■□□□□ 0.98
SMC4-211ENST00000469858 ZNF277Q9NRM2 450 aaPredicted RBP21.19■□□□□ 0.98
SMC4-211ENST00000469858 PSDA5PKW4 1024 aaPredicted RBP21.18■□□□□ 0.98
SMC4-211ENST00000469858 DNM1Q05193 864 aaKnown RBP21.18■□□□□ 0.98
SMC4-211ENST00000469858 SLC44A5Q8NCS7 719 aa21.18■□□□□ 0.98
SMC4-211ENST00000469858 NUP133Q8WUM0 1156 aa21.18■□□□□ 0.98
SMC4-211ENST00000469858 FAM217BQ9NTX9 383 aaPredicted RBP21.18■□□□□ 0.98
SMC4-211ENST00000469858 USP40Q9NVE5 1235 aa21.18■□□□□ 0.98
SMC4-211ENST00000469858 NID2Q14112 1375 aa21.18■□□□□ 0.98
SMC4-211ENST00000469858 NMT2O60551 498 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 GSE1Q14687 1217 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 LARGE2Q8N3Y3 721 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 GUCY1B3Q02153 619 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 RTN1Q16799 776 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 SOGA3Q5TF21 947 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 APOBEC3HQ6NTF7 200 aaKnown RBP21.17■□□□□ 0.98
SMC4-211ENST00000469858 PHKBQ93100 1093 aa21.17■□□□□ 0.98
SMC4-211ENST00000469858 WDHD1O75717 1129 aaPredicted RBP21.16■□□□□ 0.98
SMC4-211ENST00000469858 NTRK3Q16288 839 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 DALRD3Q5D0E6 543 aaKnown RBP21.16■□□□□ 0.98
SMC4-211ENST00000469858 CDC42EP5Q6NZY7 148 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 FAM173BQ6P4H8 233 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 MYH15Q9Y2K3 1946 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 FIBPO43427 364 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 RBM5P52756 815 aaKnown RBP eCLIP21.16■□□□□ 0.98
SMC4-211ENST00000469858 RCAN1P53805 252 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 TFAP4Q01664 338 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 KLHL40Q2TBA0 621 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 USP48Q86UV5 1035 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 ZDHHC15Q96MV8 337 aa21.16■□□□□ 0.98
SMC4-211ENST00000469858 DDX4Q9NQI0 724 aaKnown RBP21.16■□□□□ 0.98
SMC4-211ENST00000469858 COL4A5P29400 1685 aa21.15■□□□□ 0.98
SMC4-211ENST00000469858 RESTQ13127 1097 aa21.15■□□□□ 0.98
SMC4-211ENST00000469858 CATIPQ7Z7H3 387 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms