RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 IL25Q9H293 177 aa9.65□□□□□ -0.86
HDAC6-216ENST00000468949 DHX36Q9H2U1 1008 aaKnown RBP9.65□□□□□ -0.86
HDAC6-216ENST00000468949 ZNF287Q9HBT7 754 aa9.65□□□□□ -0.86
HDAC6-216ENST00000468949 DCP1AQ9NPI6 582 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-216ENST00000468949 TOMM22Q9NS69 142 aa9.65□□□□□ -0.86
HDAC6-216ENST00000468949 NAV1Q8NEY1 1877 aa9.65□□□□□ -0.86
HDAC6-216ENST00000468949 WDHD1O75717 1129 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 CELF2O95319 508 aaKnown RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 PRKAR2AP13861 404 aaKnown RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 NF2P35240 595 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 NFIAQ12857 509 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 TRDNQ13061 729 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 ALX1Q15699 326 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 RALYLQ86SE5 291 aaKnown RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 FAM83AQ86UY5 434 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 MAP4K1Q92918 833 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 ZBED3Q96IU2 234 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 CSRNP1Q96S65 589 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 RNF41Q9H4P4 317 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 ZNF408Q9H9D4 720 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 EPB41L4AQ9HCS5 686 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-216ENST00000468949 PPP2R3BQ9Y5P8 575 aa9.64□□□□□ -0.87
HDAC6-216ENST00000468949 USP17L12C9JPN9 530 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 ADM5C9JUS6 153 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 USP17L21D6R901 530 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 FGAP02671 866 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 HAND2P61296 217 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 FMR1Q06787 632 aaKnown RBP eCLIP9.63□□□□□ -0.87
HDAC6-216ENST00000468949 PDE4BQ07343 736 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 PPARAQ07869 468 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 KRT32Q14532 448 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 RASA3Q14644 834 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 CREB3L3Q68CJ9 461 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 STK11IPQ8N1F8 1099 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 FAM151AQ8WW52 585 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 C22orf23Q9BZE7 217 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 DDX4Q9NQI0 724 aaKnown RBP9.63□□□□□ -0.87
HDAC6-216ENST00000468949 PALD1Q9ULE6 856 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 TLL2Q9Y6L7 1015 aa9.63□□□□□ -0.87
HDAC6-216ENST00000468949 COL2A1P02458 1487 aaPredicted RBP9.63□□□□□ -0.87
HDAC6-216ENST00000468949 ASTN2O75129 1339 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-216ENST00000468949 SLC27A2O14975 620 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 ECE1P42892 770 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 SBK1Q52WX2 424 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 RRP12Q5JTH9 1297 aaKnown RBP9.62□□□□□ -0.87
HDAC6-216ENST00000468949 CST9Q5W186 159 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 DCAF15Q66K64 600 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 CTR9Q6PD62 1173 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 CHRDL2Q6WN34 429 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 MFSD6Q6ZSS7 791 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 PAXIP1Q6ZW49 1069 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-216ENST00000468949 USP26Q9BXU7 913 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 TMEM39BQ9GZU3 492 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 DEFB129Q9H1M3 183 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 CNNM2Q9H8M5 875 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 MKNK2Q9HBH9 465 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 PI4KBQ9UBF8 816 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 FAM198AQ9UFP1 575 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 SERPINB13Q9UIV8 391 aa9.62□□□□□ -0.87
HDAC6-216ENST00000468949 LAMB1P07942 1786 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 SEC24BO95487 1268 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 CYP2D6P10635 497 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 PCP11498 1178 aaKnown RBP9.61□□□□□ -0.87
HDAC6-216ENST00000468949 PSMA5P28066 241 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 HSPA4P34932 840 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 FGD1P98174 961 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 CTDSPL2Q05D32 466 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 DEFB115Q30KQ5 88 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 SUPT20HL1Q3ZLR7 823 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 SAPCD2Q86UD0 394 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 USP48Q86UV5 1035 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 CDCA5Q96FF9 252 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 HHIPL1Q96JK4 782 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 CAPNS2Q96L46 248 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 KRT23Q9C075 422 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.61□□□□□ -0.87
HDAC6-216ENST00000468949 SWAP70Q9UH65 585 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 HERC5Q9UII4 1024 aaKnown RBP9.61□□□□□ -0.87
HDAC6-216ENST00000468949 TAOK2Q9UL54 1235 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 FARP1Q9Y4F1 1045 aaPredicted RBP9.61□□□□□ -0.87
HDAC6-216ENST00000468949 ATRNL1Q5VV63 1379 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 ROBO3Q96MS0 1386 aa9.61□□□□□ -0.87
HDAC6-216ENST00000468949 CYP2D7A0A087X1C5 515 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 TSPY2A6NKD2 308 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 FOXP2O15409 715 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 CYP21A2P08686 494 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 HMGB1P09429 215 aaKnown RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 HSPA1AP0DMV8 641 aaKnown RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 HSPA1BP0DMV9 641 aaKnown RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 VEGFBP49765 207 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 FXR2P51116 673 aaKnown RBP eCLIP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 ANAPC15P60006 121 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 TTLL12Q14166 644 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 SART3Q15020 963 aaKnown RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 AKNAD1Q5T1N1 836 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 C12orf60Q5U649 245 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 ZNF444Q8N0Y2 327 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-216ENST00000468949 NCOA7Q8NI08 942 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 STAG1Q8WVM7 1258 aa9.6□□□□□ -0.87
HDAC6-216ENST00000468949 ESR2Q92731 530 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms