RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 STOX1Q6ZVD7 989 aa13.26□□□□□ -0.29
VCP-204ENST00000466100 C16orf86Q6ZW13 317 aa13.26□□□□□ -0.29
VCP-204ENST00000466100 DCPSQ96C86 337 aaKnown RBP13.26□□□□□ -0.29
VCP-204ENST00000466100 TBC1D32Q96NH3 1257 aa13.26□□□□□ -0.29
VCP-204ENST00000466100 CSRNP1Q96S65 589 aa13.26□□□□□ -0.29
VCP-204ENST00000466100 GPBP1L1Q9HC44 474 aaPredicted RBP13.26□□□□□ -0.29
VCP-204ENST00000466100 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.26□□□□□ -0.29
VCP-204ENST00000466100 MINDY4BA8MYZ0 360 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 ZNF213O14771 459 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 YY1P25490 414 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 MAP3K10Q02779 954 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 CTDSPL2Q05D32 466 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 DLK2Q6UY11 383 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 KRT26Q7Z3Y9 468 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 TTC6Q86TZ1 520 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 SULF1Q8IWU6 871 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 STAG1Q8WVM7 1258 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 DYNLL2Q96FJ2 89 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 GLIS2Q9BZE0 524 aaPredicted RBP13.25□□□□□ -0.29
VCP-204ENST00000466100 PI4KBQ9UBF8 816 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 SERPINB13Q9UIV8 391 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 TAOK2Q9UL54 1235 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 SNX14Q9Y5W7 946 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 PHIPQ8WWQ0 1821 aa13.25□□□□□ -0.29
VCP-204ENST00000466100 NEDD4P46934 1319 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 TBC1D12O60347 775 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 HLA-DOAP06340 250 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 COL9A3Q14050 684 aaPredicted RBP13.24□□□□□ -0.29
VCP-204ENST00000466100 AKNAD1Q5T1N1 836 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 NBPF12Q5TAG4 269 aaPredicted RBP13.24□□□□□ -0.29
VCP-204ENST00000466100 MAP1SQ66K74 1059 aaPredicted RBP13.24□□□□□ -0.29
VCP-204ENST00000466100 USP48Q86UV5 1035 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 AMOTL1Q8IY63 956 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 SLC44A5Q8NCS7 719 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 NKX2-3Q8TAU0 364 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 KIF2CQ99661 725 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 C22orf23Q9BZE7 217 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 INCENPQ9NQS7 918 aa13.24□□□□□ -0.29
VCP-204ENST00000466100 E7EWF7 191 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 ORC4O43929 436 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 SHMT1P34896 483 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 ANAPC15P60006 121 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 ADCK5Q3MIX3 580 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 RNF20Q5VTR2 975 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 PRAMEF18Q5VWM3 479 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 CDC37L1Q7L3B6 337 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 FOXP4Q8IVH2 680 aaPredicted RBP13.23□□□□□ -0.29
VCP-204ENST00000466100 ZSCAN29Q8IWY8 852 aaPredicted RBP13.23□□□□□ -0.29
VCP-204ENST00000466100 ZNF784Q8NCA9 323 aaPredicted RBP13.23□□□□□ -0.29
VCP-204ENST00000466100 CDCA5Q96FF9 252 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 HERC5Q9UII4 1024 aaKnown RBP13.23□□□□□ -0.29
VCP-204ENST00000466100 MYH4Q9Y623 1939 aa13.23□□□□□ -0.29
VCP-204ENST00000466100 FAM196BA6NMK8 535 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 PCP11498 1178 aaKnown RBP13.22□□□□□ -0.29
VCP-204ENST00000466100 RASA1P20936 1047 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 MCCP23508 829 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 CDK8P49336 464 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 CHADLQ6NUI6 762 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 TATDN1Q6P1N9 297 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 UPF2Q9HAU5 1272 aaKnown RBP13.22□□□□□ -0.29
VCP-204ENST00000466100 SWAP70Q9UH65 585 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 CLEC11AQ9Y240 323 aa13.22□□□□□ -0.29
VCP-204ENST00000466100 PLIN4Q96Q06 1357 aa13.21□□□□□ -0.29
VCP-204ENST00000466100 PHF20L1A8MW92 1017 aa13.21□□□□□ -0.29
VCP-204ENST00000466100 TRAF5O00463 557 aa13.21□□□□□ -0.29
VCP-204ENST00000466100 ITGBL1O95965 494 aaPredicted RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 SLC3A2P08195 630 aaKnown RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 ZKSCAN1P17029 563 aaPredicted RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 RRP1BQ14684 758 aaKnown RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 MFSD6Q6ZSS7 791 aa13.21□□□□□ -0.29
VCP-204ENST00000466100 MB21D2Q8IYB1 491 aaPredicted RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 RNF41Q9H4P4 317 aaPredicted RBP13.21□□□□□ -0.29
VCP-204ENST00000466100 PTPRFP10586 1907 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 PRDM1O75626 825 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 FMR1Q06787 632 aaKnown RBP eCLIP13.2□□□□□ -0.37e-6■■□□□ 12.8
VCP-204ENST00000466100 PDE4BQ07343 736 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 KRT32Q14532 448 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 SUPT20HL1Q3ZLR7 823 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 MIGA2Q7L4E1 593 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 STK11IPQ8N1F8 1099 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 CRACR2BQ8N4Y2 399 aaPredicted RBP13.2□□□□□ -0.3
VCP-204ENST00000466100 HOOK2Q96ED9 719 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 TM6SF1Q9BZW5 370 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 ZNF112Q9UJU3 913 aa13.2□□□□□ -0.3
VCP-204ENST00000466100 PASKQ96RG2 1323 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 B4E1Z4 1266 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 NT5C2P49902 561 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 JAG1P78504 1218 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 SHROOM1Q2M3G4 852 aaPredicted RBP13.19□□□□□ -0.3
VCP-204ENST00000466100 DCAF15Q66K64 600 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 CYB5R4Q7L1T6 521 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 RBM46Q8TBY0 533 aaKnown RBP13.19□□□□□ -0.3
VCP-204ENST00000466100 JAKMIP1Q96N16 626 aaKnown RBP13.19□□□□□ -0.3
VCP-204ENST00000466100 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.19□□□□□ -0.3
VCP-204ENST00000466100 CNNM2Q9H8M5 875 aa13.19□□□□□ -0.3
VCP-204ENST00000466100 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.19□□□□□ -0.3
VCP-204ENST00000466100 IGKV6D-41A0A0C4DH26 115 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 AKR1B1P15121 316 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 ANTXR2P58335 489 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 EXOSC10Q01780 885 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms