RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 CDK12Q9NYV4 1490 aaPredicted RBP10.25□□□□□ -0.77
HPS4-208ENST00000464362 PDE8AO60658 829 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 LDHCP07864 332 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 RFC4P35249 363 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 IRX3P78415 501 aaPredicted RBP10.25□□□□□ -0.77
HPS4-208ENST00000464362 SF3A3Q12874 501 aaKnown RBP eCLIP10.25□□□□□ -0.779e-7■■■■□ 22
HPS4-208ENST00000464362 RESTQ13127 1097 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 ZMYM1Q5SVZ6 1142 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 ZNF654Q8IZM8 581 aa10.25□□□□□ -0.77
HPS4-208ENST00000464362 VGLL3A8MV65 326 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 FGFR1OPO95684 399 aaKnown RBP10.24□□□□□ -0.77
HPS4-208ENST00000464362 GNAT2P19087 354 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 SPECC1LQ69YQ0 1117 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 MLKLQ8NB16 471 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 DYDC1Q8WWB3 177 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 ATRIPQ8WXE1 791 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CTNNBL1Q8WYA6 563 aaPredicted RBP10.24□□□□□ -0.77
HPS4-208ENST00000464362 LPIN2Q92539 896 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 PNPLA6Q8IY17 1366 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 PRKAB2O43741 272 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 PPP1R12BO60237 982 aaPredicted RBP10.24□□□□□ -0.77
HPS4-208ENST00000464362 KRBA2Q6ZNG9 492 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 NOSTRINQ8IVI9 506 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 IFNL3Q8IZI9 196 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 NEK11Q8NG66 645 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 RCOR1Q9UKL0 485 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CARMIL3Q8ND23 1372 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 RIMBP2O15034 1052 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 SEC31AO94979 1220 aaKnown RBP10.24□□□□□ -0.77
HPS4-208ENST00000464362 TXKP42681 527 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 KCNQ4P56696 695 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 PDE4DQ08499 809 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CCDC144BQ3MJ40 725 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 DYMQ7RTS9 669 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 VPS36Q86VN1 386 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 IMPACTQ9P2X3 320 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 EFCAB6Q5THR3 1501 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 TACC1O75410 805 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CMA1P23946 247 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CALML3P27482 149 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 PTPROQ16827 1216 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 WWC2Q6AWC2 1192 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 APOA5Q6Q788 366 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 FAM114A1Q8IWE2 563 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 CSGALNACT2Q8N6G5 542 aa10.24□□□□□ -0.77
HPS4-208ENST00000464362 OAS2P29728 719 aaKnown RBP10.23□□□□□ -0.77
HPS4-208ENST00000464362 LINC00301Q8NCQ3 95 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 ZNF622Q969S3 477 aaKnown RBP eCLIP10.23□□□□□ -0.778e-7■□□□□ 8.8
HPS4-208ENST00000464362 ANKRD62A6NC57 917 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 TBC1D7Q9P0N9 293 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 RTL9Q8NET4 1388 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 SMIM23A6NLE4 172 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 USP27XA6NNY8 438 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 MCM3P25205 808 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 NOC4LQ9BVI4 516 aaKnown RBP10.23□□□□□ -0.77
HPS4-208ENST00000464362 GPCPD1Q9NPB8 672 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 PPP2R2CQ9Y2T4 447 aa10.23□□□□□ -0.77
HPS4-208ENST00000464362 KIF13AQ9H1H9 1805 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 GSTTP1A0A1W2PQM5 241 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 SAMM50Q9Y512 469 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 TNKSO95271 1327 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 MLH3Q9UHC1 1453 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 TRAF5O00463 557 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 PLS1Q14651 629 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 FANCBQ8NB91 859 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 NAPGQ99747 312 aaPredicted RBP10.22□□□□□ -0.77
HPS4-208ENST00000464362 RTEL1Q9NZ71 1219 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 ABCC3O15438 1527 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 LDHBP07195 334 aaKnown RBP10.22□□□□□ -0.77
HPS4-208ENST00000464362 CASP1P29466 404 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 KRT83P78385 493 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 PAK1Q13153 545 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 KRT79Q5XKE5 535 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 EHBP1Q8NDI1 1231 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 PYM1Q9BRP8 204 aaKnown RBP10.22□□□□□ -0.77
HPS4-208ENST00000464362 SEC31BQ9NQW1 1179 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 FAM207AQ9NSI2 230 aaPredicted RBP10.22□□□□□ -0.77
HPS4-208ENST00000464362 ABCA6Q8N139 1617 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 TET3O43151 1660 aa10.22□□□□□ -0.77
HPS4-208ENST00000464362 CYP2D7A0A087X1C5 515 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CALM1P0DP23 149 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CALM2P0DP24 149 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CALM3P0DP25 149 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 GNAQP50148 359 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CTSWP56202 376 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CKAP4Q07065 602 aaKnown RBP10.21□□□□□ -0.77
HPS4-208ENST00000464362 CLEC17AQ6ZS10 378 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 SYCP3Q8IZU3 236 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 GPATCH11Q8N954 259 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 RASGRP4Q8TDF6 673 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 GPKOWQ92917 476 aaPredicted RBP eCLIP10.21□□□□□ -0.77
HPS4-208ENST00000464362 PPP1R13BQ96KQ4 1090 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 ZBTB1Q9Y2K1 713 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 TULP4Q9NRJ4 1543 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CPSF1Q10570 1443 aaKnown RBP10.21□□□□□ -0.77
HPS4-208ENST00000464362 TLDC2A0PJX2 215 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 GOLGA8HP0CJ92 632 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 CALRP27797 417 aaKnown RBP10.21□□□□□ -0.77
HPS4-208ENST00000464362 MNAT1P51948 309 aa10.21□□□□□ -0.77
HPS4-208ENST00000464362 TFAP4Q01664 338 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms