RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SMC6Q96SB8 1091 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 TMEM87AQ8NBN3 555 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 PLEKHF1Q96S99 279 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 CLASP1Q7Z460 1538 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 E7EWF7 191 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 FAM13AO94988 1023 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 TPTE2Q6XPS3 522 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 C8orf37Q96NL8 207 aa21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 CMA1P23946 247 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 TIMM10P62072 90 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 ZNF790Q6PG37 636 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 NUCKS1Q9H1E3 243 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 MRVI1Q9Y6F6 885 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 ZBTB16Q05516 673 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 MIGA1Q8NAN2 632 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 ZKSCAN3Q9BRR0 538 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 MTMR3Q13615 1198 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 ERCC6LQ2NKX8 1250 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 XAGE2Q96GT9 111 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 MCM9Q9NXL9 1143 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 CCDC25Q86WR0 208 aa21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 NIP7Q9Y221 180 aaKnown RBP eCLIP21.24■□□□□ 0.99
CCDC88B-204ENST00000463837 PFKFB1P16118 471 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 ZNF804AQ7Z570 1209 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 SPATS2Q86XZ4 545 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 NKIRAS1Q9NYS0 192 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 TPCN1Q9ULQ1 816 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 SLC9C1Q4G0N8 1177 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 TTC6Q86TZ1 520 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 KCNK9Q9NPC2 374 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 A0A1W2PQ27 194 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 A0A1W2PQ64 194 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 A0A1W2PQD8 194 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 TRAF5O00463 557 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 ALDH3A1P30838 453 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 TNNI2P48788 182 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 LRMPQ12912 555 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 GCKRQ14397 625 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 NAA25Q14CX7 972 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 PPP1R7Q15435 360 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 GSTA5Q7RTV2 222 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 BICD1Q96G01 975 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 ACSBG1Q96GR2 724 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 PPP2R2CQ9Y2T4 447 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 CCDC84Q86UT8 332 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 DENND2AQ9ULE3 1009 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 UTP11Q9Y3A2 253 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 MAGI3Q5TCQ9 1506 aa21.23■□□□□ 0.99
CCDC88B-204ENST00000463837 CFAP221Q4G0U5 840 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 MED4Q9NPJ6 270 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 VGLL3A8MV65 326 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 PUM3Q15397 648 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 SMARCC2Q8TAQ2 1214 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 USP44Q9H0E7 712 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 TTC37Q6PGP7 1564 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 MYCNP04198 464 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 LONRF3Q496Y0 759 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 ANKRD2Q9GZV1 360 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 STIM2Q9P246 746 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 PYCARDQ9ULZ3 195 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 ATP6V0A2Q9Y487 856 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 RAPGEF1Q13905 1077 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 DZIP3Q86Y13 1208 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 MAPK8IP1Q9UQF2 711 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 SAR1BQ9Y6B6 198 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 EPB41P11171 864 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 GJC1P36383 396 aa21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 LSG1Q9H089 658 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-204ENST00000463837 ATP2A2P16615 1042 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PTH1RQ03431 593 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 ASIC2Q16515 512 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 NBPF14Q5TI25 921 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 CHAMP1Q96JM3 812 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 USP28Q96RU2 1077 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 SPDYE3A6NKU9 549 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PPFIA4O75335 1185 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 RTCBQ9Y3I0 505 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PCDH11XQ9BZA7 1347 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PCDH11YQ9BZA8 1340 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 GCP02774 474 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PARP1P09874 1014 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 FERP16591 822 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 INTS8Q75QN2 995 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 HELBQ8NG08 1087 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 TAB2Q9NYJ8 693 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 POLD1P28340 1107 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 MAGEA1P43355 309 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 ATP11AP98196 1134 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 PIK3AP1Q6ZUJ8 805 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 GOLGA5Q8TBA6 731 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 NELFBQ8WX92 580 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 STK24Q9Y6E0 443 aa21.21■□□□□ 0.99
CCDC88B-204ENST00000463837 EIF4A1P60842 406 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 KDRP35968 1356 aa21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 RNASE9P60153 205 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 PPFIBP2Q8ND30 876 aa21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 PNOCQ13519 176 aa21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 SLF1Q9BQI6 1058 aa21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 KLHDC4Q8TBB5 520 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms