RNA–Protein interactions for RNA: ENST00000463372.5

C9orf3-211, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 919 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-211ENST00000463372 PRRC2BQ5JSZ5 2229 aaKnown RBP17.11■□□□□ 0.33
C9orf3-211ENST00000463372 CACNA1GO43497 2377 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 LOC285556D6RIA3 1793 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 GBF1Q92538 1859 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 RAG1P15918 1043 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 GYG1P46976 350 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 NEXNQ0ZGT2 675 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 CSPP1Q1MSJ5 1256 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 GJC2Q5T442 439 aaPredicted RBP17.1■□□□□ 0.33
C9orf3-211ENST00000463372 MFSD14CQ5VZR4 134 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 CCAR1Q8IX12 1150 aaKnown RBP17.1■□□□□ 0.33
C9orf3-211ENST00000463372 ARRDC4Q8NCT1 418 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 HERVK_113Q902F9 699 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
C9orf3-211ENST00000463372 MORF4L1Q9UBU8 362 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 MAST3O60307 1309 aa17.1■□□□□ 0.33
C9orf3-211ENST00000463372 PHF20L1A8MW92 1017 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 IGKV5-2P06315 115 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 ITGB8P26012 769 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 CHAF1AQ13111 956 aaPredicted RBP17.09■□□□□ 0.33
C9orf3-211ENST00000463372 SNX17Q15036 470 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 APBA2Q99767 749 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 PLA2G12BQ9BX93 195 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 ASCC2Q9H1I8 757 aaPredicted RBP17.09■□□□□ 0.33
C9orf3-211ENST00000463372 MSRAQ9UJ68 235 aa17.09■□□□□ 0.33
C9orf3-211ENST00000463372 LRRFIP2Q9Y608 721 aaKnown RBP17.09■□□□□ 0.33
C9orf3-211ENST00000463372 USP34Q70CQ2 3546 aa17.08■□□□□ 0.33
C9orf3-211ENST00000463372 CACNA1BQ00975 2339 aa17.08■□□□□ 0.33
C9orf3-211ENST00000463372 TLL1O43897 1013 aa17.08■□□□□ 0.32
C9orf3-211ENST00000463372 CSF1RP07333 972 aa17.08■□□□□ 0.32
C9orf3-211ENST00000463372 MAPK4P31152 587 aa17.08■□□□□ 0.32
C9orf3-211ENST00000463372 GRXCR1A8MXD5 290 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 H7C1W4 665 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 FRAT2O75474 233 aaPredicted RBP17.07■□□□□ 0.32
C9orf3-211ENST00000463372 CLTBP09497 229 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 TLE2Q04725 743 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 HHIPL2Q6UWX4 724 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 VPS37DQ86XT2 251 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 USP6NLQ92738 828 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 DAGLAQ9Y4D2 1042 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 TRANK1O15050 2925 aa17.07■□□□□ 0.32
C9orf3-211ENST00000463372 MYCNP04198 464 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-211ENST00000463372 IFIT5Q13325 482 aaKnown RBP17.06■□□□□ 0.32
C9orf3-211ENST00000463372 RAB30Q15771 203 aa17.06■□□□□ 0.32
C9orf3-211ENST00000463372 CWF19L2Q2TBE0 894 aaKnown RBP17.06■□□□□ 0.32
C9orf3-211ENST00000463372 C1orf53Q5VUE5 145 aa17.06■□□□□ 0.32
C9orf3-211ENST00000463372 GPRC5AQ8NFJ5 357 aa17.06■□□□□ 0.32
C9orf3-211ENST00000463372 FAM84BQ96KN1 310 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-211ENST00000463372 SLC28A3Q9HAS3 691 aa17.06■□□□□ 0.32
C9orf3-211ENST00000463372 COG5Q9UP83 839 aa17.06■□□□□ 0.32
C9orf3-211ENST00000463372 UTYO14607 1347 aa17.05■□□□□ 0.32
C9orf3-211ENST00000463372 CTNND1O60716 968 aaKnown RBP17.05■□□□□ 0.32
C9orf3-211ENST00000463372 CWC22Q9HCG8 908 aaKnown RBP17.05■□□□□ 0.32
C9orf3-211ENST00000463372 IQSEC3Q9UPP2 1182 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-211ENST00000463372 ZNF318Q5VUA4 2279 aa17.05■□□□□ 0.32
C9orf3-211ENST00000463372 NEURL1BA8MQ27 555 aa17.04■□□□□ 0.32
C9orf3-211ENST00000463372 KIAA0355O15063 1070 aa17.04■□□□□ 0.32
C9orf3-211ENST00000463372 IRX3P78415 501 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-211ENST00000463372 UBE4AQ14139 1066 aa17.04■□□□□ 0.32
C9orf3-211ENST00000463372 MORN1Q5T089 497 aa17.04■□□□□ 0.32
C9orf3-211ENST00000463372 CCDC174Q6PII3 467 aa17.04■□□□□ 0.32
C9orf3-211ENST00000463372 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.04■□□□□ 0.327e-7■■■□□ 15.2
C9orf3-211ENST00000463372 ADCYAP1R1P41586 468 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 NFIAQ12857 509 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 KSR2Q6VAB6 950 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 GPR142Q7Z601 462 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 PLEKHH3Q7Z736 793 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 CCDC84Q86UT8 332 aaPredicted RBP17.03■□□□□ 0.32
C9orf3-211ENST00000463372 FERMT2Q96AC1 680 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 CNNM1Q9NRU3 951 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.03■□□□□ 0.32
C9orf3-211ENST00000463372 SUGT1Q9Y2Z0 365 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 CHMP3Q9Y3E7 222 aa17.03■□□□□ 0.32
C9orf3-211ENST00000463372 PI4KAP2A4QPH2 592 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 TMPOP42166 694 aaKnown RBP17.02■□□□□ 0.32
C9orf3-211ENST00000463372 HMGCS2P54868 508 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 SPP2Q13103 211 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 CDC42EP5Q6NZY7 148 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 LDHAL6AQ6ZMR3 332 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 PI4KAP1Q8N8J0 262 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 EDC3Q96F86 508 aaKnown RBP17.02■□□□□ 0.32
C9orf3-211ENST00000463372 NKX2-4Q9H2Z4 354 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 TMEM39AQ9NV64 488 aa17.02■□□□□ 0.32
C9orf3-211ENST00000463372 ATAD5Q96QE3 1844 aa17.02■□□□□ 0.31
C9orf3-211ENST00000463372 BRWD1Q9NSI6 2320 aa17.02■□□□□ 0.31
C9orf3-211ENST00000463372 MYH13Q9UKX3 1938 aa17.02■□□□□ 0.31
C9orf3-211ENST00000463372 C5orf42Q9H799 3197 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 ALADP13716 330 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 ATP2B2Q01814 1243 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 MAP2K5Q13163 448 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 GCKRQ14397 625 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 TAF7LQ5H9L4 462 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 FAM198AQ9UFP1 575 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 ATRNL1Q5VV63 1379 aa17.01■□□□□ 0.31
C9orf3-211ENST00000463372 PEX10O60683 326 aa17■□□□□ 0.31
C9orf3-211ENST00000463372 ZSCAN29Q8IWY8 852 aaPredicted RBP17■□□□□ 0.31
C9orf3-211ENST00000463372 FLRT1Q9NZU1 646 aa17■□□□□ 0.31
C9orf3-211ENST00000463372 GTPBP6O43824 516 aaPredicted RBP16.99■□□□□ 0.31
C9orf3-211ENST00000463372 PQBP1O60828 265 aaKnown RBP16.99■□□□□ 0.31
C9orf3-211ENST00000463372 GLRX3O76003 335 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms