RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 PIK3C2BO00750 1634 aa10.15□□□□□ -0.79
UBE4B-204ENST00000462658 ROCK2O75116 1388 aaKnown RBP10.14□□□□□ -0.79
UBE4B-204ENST00000462658 DLL1O00548 723 aa10.14□□□□□ -0.79
UBE4B-204ENST00000462658 CTSHP09668 335 aa10.14□□□□□ -0.79
UBE4B-204ENST00000462658 XRCC5P13010 732 aaKnown RBP10.14□□□□□ -0.79
UBE4B-204ENST00000462658 ELNP15502 786 aa10.14□□□□□ -0.79
UBE4B-204ENST00000462658 FOXD4L6Q3SYB3 417 aaPredicted RBP10.14□□□□□ -0.79
UBE4B-204ENST00000462658 FOXD4L3Q6VB84 417 aaPredicted RBP10.14□□□□□ -0.79
UBE4B-204ENST00000462658 TNRQ92752 1358 aa10.14□□□□□ -0.79
UBE4B-204ENST00000462658 UBR1Q8IWV7 1749 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 ADGRF5Q8IZF2 1346 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 ADAM11O75078 769 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 RASSF7Q02833 373 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 GSTM4Q03013 218 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 C19orf57Q0VDD7 668 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 KCNMA1Q12791 1236 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 TPTE2Q6XPS3 522 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 MAP4K3Q8IVH8 894 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 DCAF5Q96JK2 942 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 GPN3Q9UHW5 284 aaPredicted RBP10.13□□□□□ -0.79
UBE4B-204ENST00000462658 LTBP4Q8N2S1 1624 aa10.13□□□□□ -0.79
UBE4B-204ENST00000462658 MYOM2P54296 1465 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 KRBA1A5PL33 1030 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 UNCXA6NJT0 531 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 B3GALT4O96024 378 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 SELPP16109 830 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 CD68P34810 354 aaPredicted RBP10.12□□□□□ -0.79
UBE4B-204ENST00000462658 ARL4DP49703 201 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 NLRP12P59046 1061 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 RPS26P11Q5JNZ5 115 aaPredicted RBP10.12□□□□□ -0.79
UBE4B-204ENST00000462658 MEI1Q5TIA1 1274 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 KLHL23Q8NBE8 558 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 WNT8BQ93098 351 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 SRA1Q9HD15 236 aaKnown RBP10.12□□□□□ -0.79
UBE4B-204ENST00000462658 OSGEPQ9NPF4 335 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 POLR1AO95602 1720 aaPredicted RBP10.12□□□□□ -0.79
UBE4B-204ENST00000462658 GPRASP1Q5JY77 1395 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 USP47Q96K76 1375 aa10.12□□□□□ -0.79
UBE4B-204ENST00000462658 MRPL58Q14197 206 aaKnown RBP10.11□□□□□ -0.79
UBE4B-204ENST00000462658 SUZ12Q15022 739 aaKnown RBP10.11□□□□□ -0.79
UBE4B-204ENST00000462658 TTF2Q9UNY4 1162 aaKnown RBP10.11□□□□□ -0.79
UBE4B-204ENST00000462658 TRPM1Q7Z4N2 1603 aa10.11□□□□□ -0.79
UBE4B-204ENST00000462658 MYO5BQ9ULV0 1848 aa10.1□□□□□ -0.79
UBE4B-204ENST00000462658 WISP1O95388 367 aa10.1□□□□□ -0.79
UBE4B-204ENST00000462658 UBASH3BQ8TF42 649 aa10.1□□□□□ -0.79
UBE4B-204ENST00000462658 NRXN1Q9ULB1 1477 aa10.1□□□□□ -0.79
UBE4B-204ENST00000462658 STRCP1A6NGW2 1772 aa10.09□□□□□ -0.79
UBE4B-204ENST00000462658 TMEM131LA2VDJ0 1609 aa10.09□□□□□ -0.79
UBE4B-204ENST00000462658 TRIM56Q9BRZ2 755 aaKnown RBP10.09□□□□□ -0.79
UBE4B-204ENST00000462658 SOX17Q9H6I2 414 aaPredicted RBP10.09□□□□□ -0.79
UBE4B-204ENST00000462658 ZFYVE1Q9HBF4 777 aa10.09□□□□□ -0.79
UBE4B-204ENST00000462658 NLRP1Q9C000 1473 aa10.09□□□□□ -0.79
UBE4B-204ENST00000462658 ST20-MTHFSA0A0A6YYL1 179 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 APBA3O96018 575 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 DDX10Q13206 875 aaKnown RBP10.08□□□□□ -0.8
UBE4B-204ENST00000462658 IGF2-ASQ6U949 168 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 USP26Q9BXU7 913 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 C14orf93Q9H972 538 aaKnown RBP10.08□□□□□ -0.8
UBE4B-204ENST00000462658 TMEM39AQ9NV64 488 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 PPM1HQ9ULR3 514 aa10.08□□□□□ -0.8
UBE4B-204ENST00000462658 ZFYVE9O95405 1425 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 NEXMIFQ5QGS0 1516 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 IFT172Q9UG01 1749 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 ARHGAP23Q9P227 1491 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 GDF11O95390 407 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 ECEL1O95672 775 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 CELA3AP09093 270 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 CHRNA4P43681 627 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 ALYREFQ86V81 257 aaKnown RBP10.07□□□□□ -0.8
UBE4B-204ENST00000462658 STK35Q8TDR2 534 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 MRRFQ96E11 262 aaKnown RBP10.07□□□□□ -0.8
UBE4B-204ENST00000462658 CRELD1Q96HD1 420 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 NECAB3Q96P71 396 aaPredicted RBP10.07□□□□□ -0.8
UBE4B-204ENST00000462658 USP21Q9UK80 565 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 PIK3C2GO75747 1445 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 WASHC2AQ641Q2 1341 aa10.07□□□□□ -0.8
UBE4B-204ENST00000462658 PPLO60437 1756 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 ENC1O14682 589 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 PAGE1O75459 146 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 CTSBP07858 339 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 RBM25P49756 843 aaKnown RBP10.06□□□□□ -0.8
UBE4B-204ENST00000462658 DUOXA2Q1HG44 320 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.06□□□□□ -0.8
UBE4B-204ENST00000462658 NRSN2Q9GZP1 204 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 KIAA1522Q9P206 1035 aaPredicted RBP10.06□□□□□ -0.8
UBE4B-204ENST00000462658 LAMC1P11047 1609 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 RIMS2Q9UQ26 1411 aa10.06□□□□□ -0.8
UBE4B-204ENST00000462658 ALX3O95076 343 aa10.05□□□□□ -0.8
UBE4B-204ENST00000462658 TAF1CQ15572 869 aaPredicted RBP10.05□□□□□ -0.8
UBE4B-204ENST00000462658 AGGF1Q8N302 714 aaeCLIP10.05□□□□□ -0.8
UBE4B-204ENST00000462658 LENG1Q96BZ8 264 aaPredicted RBP10.05□□□□□ -0.8
UBE4B-204ENST00000462658 NACC1Q96RE7 527 aa10.05□□□□□ -0.8
UBE4B-204ENST00000462658 MRPL18Q9H0U6 180 aaKnown RBP10.05□□□□□ -0.8
UBE4B-204ENST00000462658 SLIT1O75093 1534 aa10.05□□□□□ -0.8
UBE4B-204ENST00000462658 KIAA1210Q9ULL0 1709 aa10.04□□□□□ -0.8
UBE4B-204ENST00000462658 MED14O60244 1454 aa10.04□□□□□ -0.8
UBE4B-204ENST00000462658 SCAF11Q99590 1463 aaKnown RBP10.04□□□□□ -0.8
UBE4B-204ENST00000462658 USP31Q70CQ4 1352 aa10.04□□□□□ -0.8
UBE4B-204ENST00000462658 CCDC7Q96M83 1385 aa10.04□□□□□ -0.8
UBE4B-204ENST00000462658 KDM5AP29375 1690 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms