RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 HTATIP2Q9BUP3 242 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 SNRKQ9NRH2 765 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.87■□□□□ 0.61
SKA3-204ENST00000462482 USP17L5A8MUK1 530 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 IGSF3O75054 1194 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 GJA8P48165 433 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 TNNI3KQ59H18 835 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 CCDC84Q86UT8 332 aaPredicted RBP18.86■□□□□ 0.61
SKA3-204ENST00000462482 PI4KBQ9UBF8 816 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 TAOK2Q9UL54 1235 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 FPGT-TNNI3KV9GXZ4 949 aa18.86■□□□□ 0.61
SKA3-204ENST00000462482 COL2A1P02458 1487 aaPredicted RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 CAP2P40123 477 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 GCLCP48506 637 aaPredicted RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 FLT3LGP49771 235 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 ATP8B2P98198 1209 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 POLA2Q14181 598 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 CRACR2BQ8N4Y2 399 aaPredicted RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 ANKRD13CQ8N6S4 541 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 SH3RF3Q8TEJ3 882 aaPredicted RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 AATFQ9NY61 560 aaKnown RBP eCLIP18.85■□□□□ 0.61
SKA3-204ENST00000462482 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 GABRQQ9UN88 632 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 HTTP42858 3142 aa18.85■□□□□ 0.61
SKA3-204ENST00000462482 RBBP6Q7Z6E9 1792 aaKnown RBP18.85■□□□□ 0.61
SKA3-204ENST00000462482 CAPN2P17655 700 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 HNRNPUQ00839 825 aaKnown RBP eCLIP18.84■□□□□ 0.61
SKA3-204ENST00000462482 FAM110CQ1W6H9 321 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 ITPRIPQ8IWB1 547 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 SSH3Q8TE77 659 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 PXYLP1Q8TE99 480 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 DBNDD2Q9BQY9 259 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 AK9Q5TCS8 1911 aa18.84■□□□□ 0.61
SKA3-204ENST00000462482 KIAA0100Q14667 2235 aaKnown RBP18.84■□□□□ 0.61
SKA3-204ENST00000462482 H0YGN5 161 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 HMGCS2P54868 508 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 IRF5Q13568 498 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 TREML2Q5T2D2 321 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 U2AF1L4Q8WU68 220 aaKnown RBP18.83■□□□□ 0.6
SKA3-204ENST00000462482 SHISA4Q96DD7 197 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 TMOD4Q9NZQ9 345 aa18.83■□□□□ 0.6
SKA3-204ENST00000462482 INHAP05111 366 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 HLA-DOAP06340 250 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 ASNSP08243 561 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 PPP4CP60510 307 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 FOXP4Q8IVH2 680 aaPredicted RBP18.82■□□□□ 0.6
SKA3-204ENST00000462482 MAPKAPK5Q8IW41 473 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 TGFBRAP1Q8WUH2 860 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 ZNF512BQ96KM6 892 aaPredicted RBP18.82■□□□□ 0.6
SKA3-204ENST00000462482 UNC93B1Q9H1C4 597 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 NR2E3Q9Y5X4 410 aa18.82■□□□□ 0.6
SKA3-204ENST00000462482 FARP2O94887 1054 aaPredicted RBP18.81■□□□□ 0.6
SKA3-204ENST00000462482 TFRCP02786 760 aaKnown RBP18.81■□□□□ 0.6
SKA3-204ENST00000462482 ELNP15502 786 aa18.81■□□□□ 0.6
SKA3-204ENST00000462482 IRX3P78415 501 aaPredicted RBP18.81■□□□□ 0.6
SKA3-204ENST00000462482 CERS3Q8IU89 383 aa18.81■□□□□ 0.6
SKA3-204ENST00000462482 C1orf115Q9H7X2 142 aa18.81■□□□□ 0.6
SKA3-204ENST00000462482 GINM1Q9NU53 330 aa18.81■□□□□ 0.6
SKA3-204ENST00000462482 COLQQ9Y215 455 aaPredicted RBP18.81■□□□□ 0.6
SKA3-204ENST00000462482 DOCK2Q92608 1830 aa18.81■□□□□ 0.6
SKA3-204ENST00000462482 MYH2Q9UKX2 1941 aa18.8■□□□□ 0.6
SKA3-204ENST00000462482 SGPL1O95470 568 aa18.8■□□□□ 0.6
SKA3-204ENST00000462482 CYP2E1P05181 493 aaPredicted RBP18.8■□□□□ 0.6
SKA3-204ENST00000462482 ZAP70P43403 619 aa18.8■□□□□ 0.6
SKA3-204ENST00000462482 SH3D19Q5HYK7 790 aa18.8■□□□□ 0.6
SKA3-204ENST00000462482 WDR18Q9BV38 432 aa18.8■□□□□ 0.6
SKA3-204ENST00000462482 ASCC2Q9H1I8 757 aaPredicted RBP18.8■□□□□ 0.6
SKA3-204ENST00000462482 FLT1P17948 1338 aa18.79■□□□□ 0.6
SKA3-204ENST00000462482 IDH1O75874 414 aaKnown RBP18.79■□□□□ 0.6
SKA3-204ENST00000462482 CYP7A1P22680 504 aa18.79■□□□□ 0.6
SKA3-204ENST00000462482 NOP58Q9Y2X3 529 aaKnown RBP18.79■□□□□ 0.6
SKA3-204ENST00000462482 C19orf81C9J6K1 198 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 BACE1P56817 501 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 MTMR2Q13614 643 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 ERC1Q8IUD2 1116 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 CCAR1Q8IX12 1150 aaKnown RBP18.78■□□□□ 0.6
SKA3-204ENST00000462482 DEFB118Q96PH6 123 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 CCDC8Q9H0W5 538 aaPredicted RBP18.78■□□□□ 0.6
SKA3-204ENST00000462482 ZSWIM8A7E2V4 1837 aa18.78■□□□□ 0.6
SKA3-204ENST00000462482 ZBTB7BO15156 539 aaPredicted RBP18.77■□□□□ 0.6
SKA3-204ENST00000462482 USP5P45974 858 aa18.77■□□□□ 0.6
SKA3-204ENST00000462482 RRP1BQ14684 758 aaKnown RBP18.77■□□□□ 0.6
SKA3-204ENST00000462482 CHRDL2Q6WN34 429 aa18.77■□□□□ 0.6
SKA3-204ENST00000462482 PIH1D3Q9NQM4 214 aaKnown RBP18.77■□□□□ 0.6
SKA3-204ENST00000462482 SAP30BPQ9UHR5 308 aaKnown RBP18.77■□□□□ 0.6
SKA3-204ENST00000462482 DBNLQ9UJU6 430 aaKnown RBP18.77■□□□□ 0.6
SKA3-204ENST00000462482 PALD1Q9ULE6 856 aa18.77■□□□□ 0.6
SKA3-204ENST00000462482 USP17L10C9JJH3 530 aa18.76■□□□□ 0.59
SKA3-204ENST00000462482 FXR1P51114 621 aaKnown RBP eCLIP18.76■□□□□ 0.59
SKA3-204ENST00000462482 MAP3K12Q12852 859 aa18.76■□□□□ 0.59
SKA3-204ENST00000462482 HSP90AB4PQ58FF6 505 aa18.76■□□□□ 0.59
SKA3-204ENST00000462482 TMED8Q6PL24 325 aaPredicted RBP18.76■□□□□ 0.59
SKA3-204ENST00000462482 UBE2Q1Q7Z7E8 422 aa18.76■□□□□ 0.59
SKA3-204ENST00000462482 DOCK1Q14185 1865 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 GDF11O95390 407 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 HMGCRP04035 888 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 MS4A1P11836 297 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 ADGRA1Q86SQ6 560 aa18.75■□□□□ 0.59
SKA3-204ENST00000462482 METTL16Q86W50 562 aaKnown RBP18.75■□□□□ 0.59
SKA3-204ENST00000462482 GPRC5AQ8NFJ5 357 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms