RNA–Protein interactions for RNA: ENST00000462289.1

VPS36-202, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 544 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-202ENST00000462289 USP42Q9H9J4 1324 aaKnown RBP7.47□□□□□ -1.21
VPS36-202ENST00000462289 GOLGB1Q14789 3259 aaKnown RBP7.47□□□□□ -1.21
VPS36-202ENST00000462289 SERTM1A2A2V5 107 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 DKK1O94907 266 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 PCBP4P57723 403 aaKnown RBP7.46□□□□□ -1.22
VPS36-202ENST00000462289 SH3PXD2AQ5TCZ1 1133 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 HDGFL1Q5TGJ6 251 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 FAM9BQ8IZU0 186 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 LARGE2Q8N3Y3 721 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 TSPYL4Q9UJ04 414 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 PRR12Q9ULL5 1215 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 FANCIQ9NVI1 1328 aa7.46□□□□□ -1.22
VPS36-202ENST00000462289 IBTKQ9P2D0 1353 aaPredicted RBP7.46□□□□□ -1.22
VPS36-202ENST00000462289 ATP10DQ9P241 1426 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 A1BGP04217 495 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 GYS1P13807 737 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 TM4SF1P30408 202 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 PSMA6P60900 246 aaKnown RBP7.45□□□□□ -1.22
VPS36-202ENST00000462289 SLFN5Q08AF3 891 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 KRT24Q2M2I5 525 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 TBCELQ5QJ74 424 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 C1orf53Q5VUE5 145 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 OGFOD1Q8N543 542 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 TFCP2L1Q9NZI6 479 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 NARFQ9UHQ1 456 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 ZNF232Q9UNY5 417 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 RTCBQ9Y3I0 505 aaKnown RBP7.45□□□□□ -1.22
VPS36-202ENST00000462289 LAMB2P55268 1798 aa7.45□□□□□ -1.22
VPS36-202ENST00000462289 RIC1Q4ADV7 1423 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 C10orf71Q711Q0 1435 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 ARFGEF1Q9Y6D6 1849 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 ELOA3CA0A087WX78 387 aaPredicted RBP7.44□□□□□ -1.22
VPS36-202ENST00000462289 PALM3A6NDB9 673 aaPredicted RBP7.44□□□□□ -1.22
VPS36-202ENST00000462289 ELOA3DA6NLF2 546 aaPredicted RBP7.44□□□□□ -1.22
VPS36-202ENST00000462289 CAMTA2O94983 1202 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 ELOA3BQ3SY89 546 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 CLEC4GQ6UXB4 293 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 LRRC69Q6ZNQ3 347 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 SYT9Q86SS6 491 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 C8orf58Q8NAV2 365 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 ELOA3Q8NG57 546 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 TSPAN10Q9H1Z9 355 aaPredicted RBP7.44□□□□□ -1.22
VPS36-202ENST00000462289 DDX21Q9NR30 783 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS36-202ENST00000462289 MKRN1Q9UHC7 482 aaKnown RBP7.44□□□□□ -1.22
VPS36-202ENST00000462289 ZBED9Q6R2W3 1325 aa7.44□□□□□ -1.22
VPS36-202ENST00000462289 ADARB2-AS1A8MUL3 147 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 ERVV-1B6SEH8 477 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 E9PSI1 815 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 SIN3BO75182 1162 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 VAMP4O75379 141 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 TRAPPC3LQ5T215 181 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 DUSP27Q5VZP5 1158 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 SMIM5Q71RC9 77 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 TSPYL6Q8N831 410 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 TNFRSF25Q93038 417 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 TRIM11Q96F44 468 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 SPON1Q9HCB6 807 aa7.43□□□□□ -1.22
VPS36-202ENST00000462289 COL11A2P13942 1736 aaPredicted RBP7.43□□□□□ -1.22
VPS36-202ENST00000462289 DDX60Q8IY21 1712 aaKnown RBP7.42□□□□□ -1.22
VPS36-202ENST00000462289 A0A087WZG4 1122 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 C1QTNF9BB2RNN3 333 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 PROSER3Q2NL68 480 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 CD163Q86VB7 1156 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 NLGN1Q8N2Q7 840 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 STAG2Q8N3U4 1231 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 RHPN1Q8TCX5 695 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 TSR2Q969E8 191 aaKnown RBP7.42□□□□□ -1.22
VPS36-202ENST00000462289 PXDNLA1KZ92 1463 aa7.42□□□□□ -1.22
VPS36-202ENST00000462289 MYH3P11055 1940 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 K7ELQ4 463 aaPredicted RBP7.41□□□□□ -1.22
VPS36-202ENST00000462289 C21orf2O43822 256 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 CT47B1P0C2W7 299 aaPredicted RBP7.41□□□□□ -1.22
VPS36-202ENST00000462289 CHRNA4P43681 627 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 DDR1Q08345 913 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 SFSWAPQ12872 951 aaKnown RBP7.41□□□□□ -1.22
VPS36-202ENST00000462289 ZNF428Q96B54 188 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 SLC30A3Q99726 388 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 CHMP4AQ9BY43 222 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 MYH16Q9H6N6 1097 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 NEUROD4Q9HD90 331 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 SRP68Q9UHB9 627 aaKnown RBP7.41□□□□□ -1.22
VPS36-202ENST00000462289 CHMP3Q9Y3E7 222 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 MAP3K15Q6ZN16 1313 aa7.41□□□□□ -1.22
VPS36-202ENST00000462289 TNRC6CQ9HCJ0 1690 aaKnown RBP7.41□□□□□ -1.22
VPS36-202ENST00000462289 KLRG2A4D1S0 409 aaPredicted RBP7.4□□□□□ -1.22
VPS36-202ENST00000462289 POLRMTO00411 1230 aaKnown RBP7.4□□□□□ -1.22
VPS36-202ENST00000462289 ZBTB7AO95365 584 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 ALAS2P22557 587 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 TRIM28Q13263 835 aaKnown RBP7.4□□□□□ -1.22
VPS36-202ENST00000462289 NFIXQ14938 502 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 TWISTNBQ3B726 338 aaPredicted RBP7.4□□□□□ -1.22
VPS36-202ENST00000462289 ZNF34Q8IZ26 560 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 TSEN2Q8NCE0 465 aaKnown RBP7.4□□□□□ -1.22
VPS36-202ENST00000462289 GLMNQ92990 594 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 PHACTR1Q9C0D0 580 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 PRDM6Q9NQX0 595 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 HYPKQ9NX55 129 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 CHPF2Q9P2E5 772 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 ANKIB1Q9P2G1 1089 aa7.4□□□□□ -1.22
VPS36-202ENST00000462289 DBF4Q9UBU7 674 aaPredicted RBP7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms