RNA–Protein interactions for RNA: ENST00000460120.5

HPS3-202, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2 BASIC

Gene HPS3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-202ENST00000460120 TOB1P50616 345 aaPredicted RBP20.9■□□□□ 0.94
HPS3-202ENST00000460120 NCAPHQ15003 741 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 METTL16Q86W50 562 aaKnown RBP20.9■□□□□ 0.94
HPS3-202ENST00000460120 TFCP2L1Q9NZI6 479 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 TNKSO95271 1327 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 MMP1P03956 469 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 IFNAR1P17181 557 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 TPM4P67936 248 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 DPF2Q92785 391 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 CELF1Q92879 486 aaKnown RBP20.9■□□□□ 0.94
HPS3-202ENST00000460120 AK7Q96M32 723 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 CABP5Q9NP86 173 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 VPS54Q9P1Q0 977 aa20.9■□□□□ 0.94
HPS3-202ENST00000460120 SERPINC1P01008 464 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 PIP4K2BP78356 416 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 RESP18Q5W5W9 173 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 FOXP4Q8IVH2 680 aaPredicted RBP20.89■□□□□ 0.93
HPS3-202ENST00000460120 FANCBQ8NB91 859 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 CDC5LQ99459 802 aaKnown RBP20.89■□□□□ 0.93
HPS3-202ENST00000460120 PPP6R2O75170 966 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 PPP4R3BQ5MIZ7 849 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 PRDM10Q9NQV6 1147 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 PCDHA5Q9Y5H7 936 aa20.89■□□□□ 0.93
HPS3-202ENST00000460120 GNAT2P19087 354 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 FANCCQ00597 558 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 PTPN14Q15678 1187 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 FAM98CQ17RN3 349 aaKnown RBP20.88■□□□□ 0.93
HPS3-202ENST00000460120 ARMCX5Q6P1M9 558 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 SLC51AQ86UW1 340 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 KRI1Q8N9T8 703 aaKnown RBP20.88■□□□□ 0.93
HPS3-202ENST00000460120 CCDC112Q8NEF3 446 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 HPSEQ9Y251 543 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 POLR2DO15514 142 aaKnown RBP20.88■□□□□ 0.93
HPS3-202ENST00000460120 RBM6P78332 1123 aaKnown RBP20.88■□□□□ 0.93
HPS3-202ENST00000460120 FAM182BQ5T319 152 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 USP49Q70CQ1 688 aa20.88■□□□□ 0.93
HPS3-202ENST00000460120 CRACR2BQ8N4Y2 399 aaPredicted RBP20.88■□□□□ 0.93
HPS3-202ENST00000460120 PRR29P0C7W0 189 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 LINC00116Q8NCU8 138 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 COL14A1Q05707 1796 aaKnown RBP20.87■□□□□ 0.93
HPS3-202ENST00000460120 PNPLA7Q6ZV29 1317 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 SPDYE4A6NLX3 237 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 NMT2O60551 498 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 PDE4BQ07343 736 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 CFAP100Q494V2 611 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 KRBA2Q6ZNG9 492 aa20.87■□□□□ 0.93
HPS3-202ENST00000460120 SRP68Q9UHB9 627 aaKnown RBP20.87■□□□□ 0.93
HPS3-202ENST00000460120 CUTAO60888 179 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 PLEKHA8P1O95397 391 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 WASF1Q92558 559 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 ZNF652Q9Y2D9 606 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 SMTNL1A8MU46 457 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 AKAP17AQ02040 695 aaKnown RBP20.86■□□□□ 0.93
HPS3-202ENST00000460120 CAVIN4Q5BKX8 364 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 TRMT44Q8IYL2 757 aaKnown RBP20.86■□□□□ 0.93
HPS3-202ENST00000460120 GNL3LQ9NVN8 582 aaKnown RBP20.86■□□□□ 0.93
HPS3-202ENST00000460120 FANCLQ9NW38 375 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 SERTAD1Q9UHV2 236 aa20.86■□□□□ 0.93
HPS3-202ENST00000460120 NPHP1O15259 732 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 SFPQP23246 707 aaKnown RBP eCLIP20.85■□□□□ 0.93
HPS3-202ENST00000460120 CBX1P83916 185 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 OLFM4Q6UX06 510 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 PDCL2Q8N4E4 241 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 ESR2Q92731 530 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 RNF41Q9H4P4 317 aaPredicted RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 MINPP1Q9UNW1 487 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 COL1A1P02452 1464 aaPredicted RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 A0A0U1RQG5 324 aaPredicted RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 TMEM232C9JQI7 657 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 UBASH3AP57075 661 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 NOM1Q5C9Z4 860 aaKnown RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 FAM47AQ5JRC9 791 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 TBC1D9BQ66K14 1250 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 CCAR2Q8N163 923 aaKnown RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 ENAHQ8N8S7 591 aaPredicted RBP20.85■□□□□ 0.93
HPS3-202ENST00000460120 SHISA4Q96DD7 197 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 HSD3B7Q9H2F3 369 aa20.85■□□□□ 0.93
HPS3-202ENST00000460120 AATFQ9NY61 560 aaKnown RBP eCLIP20.85■□□□□ 0.93
HPS3-202ENST00000460120 LRP5O75197 1615 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 COL16A1Q07092 1604 aaPredicted RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 DEXIO95424 95 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 EARS2Q5JPH6 523 aaKnown RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 V9GY48 417 aaPredicted RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 DDX60Q8IY21 1712 aaKnown RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 NEMFO60524 1076 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 TAF1P21675 1872 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 BMP6P22004 513 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 CASP1P29466 404 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 IFIT1BQ5T764 474 aaKnown RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 ZNF384Q8TF68 577 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 BPIFA3Q9BQP9 254 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 MTMR7Q9Y216 660 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 STK36Q9NRP7 1315 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 MYL5Q02045 173 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 MTERF4Q7Z6M4 381 aaKnown RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 FAM84BQ96KN1 310 aaPredicted RBP20.84■□□□□ 0.93
HPS3-202ENST00000460120 TUBE1Q9UJT0 475 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 ROBO1Q9Y6N7 1651 aa20.84■□□□□ 0.93
HPS3-202ENST00000460120 USP17L12C9JPN9 530 aa20.83■□□□□ 0.93
HPS3-202ENST00000460120 USP17L21D6R901 530 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms