RNA–Protein interactions for RNA: ENST00000459670.2

NEDD9-205, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-205ENST00000459670 CNNM2Q9H8M5 875 aa12.36□□□□□ -0.43
NEDD9-205ENST00000459670 GPHNQ9NQX3 736 aaPredicted RBP12.36□□□□□ -0.43
NEDD9-205ENST00000459670 ZC3H4Q9UPT8 1303 aaKnown RBP12.36□□□□□ -0.43
NEDD9-205ENST00000459670 PARP14Q460N5 1801 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 PRC1O43663 620 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 MCM5P33992 734 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 TNIP1Q15025 636 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 Q6ZUG5 572 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 INTS4Q96HW7 963 aaKnown RBP12.35□□□□□ -0.43
NEDD9-205ENST00000459670 NOL10Q9BSC4 688 aaKnown RBP12.35□□□□□ -0.43
NEDD9-205ENST00000459670 LRRC2Q9BYS8 371 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 RNF41Q9H4P4 317 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-205ENST00000459670 LY9Q9HBG7 655 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 SENP2Q9HC62 589 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 USP40Q9NVE5 1235 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 MCM9Q9NXL9 1143 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 ZSWIM5Q9P217 1185 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 TAOK2Q9UL54 1235 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 LIMCH1Q9UPQ0 1083 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 HPS5Q9UPZ3 1129 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 SSC5DA1L4H1 1573 aa12.35□□□□□ -0.43
NEDD9-205ENST00000459670 WNT10BO00744 389 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 KDM4AO75164 1064 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 ENTPD3O75355 529 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 RASA1P20936 1047 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 LIFRP42702 1097 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 USP5P45974 858 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 GMPSP49915 693 aaPredicted RBP12.34□□□□□ -0.43
NEDD9-205ENST00000459670 ANKRD1Q15327 319 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 RCSD1Q6JBY9 416 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 GPC2Q8N158 579 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 SLC44A5Q8NCS7 719 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 DYNLL2Q96FJ2 89 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 TMEM87BQ96K49 555 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 KRT23Q9C075 422 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 PTPRFP10586 1907 aa12.34□□□□□ -0.43
NEDD9-205ENST00000459670 IGKV6D-41A0A0C4DH26 115 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 DDTLA6NHG4 134 aaPredicted RBP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 MINDY4BA8MYZ0 360 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 PFKFB2O60825 505 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 SHMT1P34896 483 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 CACNB3P54284 484 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 MFSD6Q6ZSS7 791 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 ARHGAP27Q6ZUM4 889 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 CHST3Q7LGC8 479 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 ANKS1AQ92625 1134 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 BRF1Q92994 677 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 GTF3C6Q969F1 213 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 TDRD3Q9H7E2 651 aaKnown RBP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 MYOZ2Q9NPC6 264 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 SH2B1Q9NRF2 756 aaPredicted RBP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 ZNF70Q9UC06 446 aaPredicted RBP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 BRPF3Q9ULD4 1205 aa12.33□□□□□ -0.44
NEDD9-205ENST00000459670 ANGEL1Q9UNK9 670 aaKnown RBP12.33□□□□□ -0.44
NEDD9-205ENST00000459670 RCAN1P53805 252 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 EIF6P56537 245 aaKnown RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 MAP3K10Q02779 954 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 NBPF9Q3BBW0 867 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 RALYLQ86SE5 291 aaKnown RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 FAM83AQ86UY5 434 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 ZNF274Q96GC6 653 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 ZSCAN31Q96LW9 406 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 IL17RBQ9NRM6 502 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 TCP11L1Q9NUJ3 509 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 GPRC5DQ9NZD1 345 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 SAP30BPQ9UHR5 308 aaKnown RBP12.32□□□□□ -0.44
NEDD9-205ENST00000459670 HDAC9Q9UKV0 1011 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 TCHHQ07283 1943 aa12.32□□□□□ -0.44
NEDD9-205ENST00000459670 PRDM1O75626 825 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 CTDNEP1O95476 244 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 SLURP2P0DP57 97 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 PDIA3P30101 505 aaKnown RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 CDK8P49336 464 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 APOBRQ0VD83 1088 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 SCRN1Q12765 414 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 PICALMQ13492 652 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 DLGAP5Q15398 846 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 APOA5Q6Q788 366 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 CDAN1Q8IWY9 1227 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 ENAHQ8N8S7 591 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 SMARCC2Q8TAQ2 1214 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 TRPM4Q8TD43 1214 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 ESR2Q92731 530 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 TEPSINQ96N21 525 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 LARP6Q9BRS8 491 aaKnown RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 DHX36Q9H2U1 1008 aaKnown RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 FAM217BQ9NTX9 383 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 ASTN2O75129 1339 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-205ENST00000459670 TNKSO95271 1327 aa12.31□□□□□ -0.44
NEDD9-205ENST00000459670 TRDNQ13061 729 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 NTRK3Q16288 839 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 C9orf131Q5VYM1 1079 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 TATDN1Q6P1N9 297 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 NOL8Q76FK4 1167 aaKnown RBP12.3□□□□□ -0.44
NEDD9-205ENST00000459670 OGFOD1Q8N543 542 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 FAM151AQ8WW52 585 aa12.3□□□□□ -0.44
NEDD9-205ENST00000459670 RNF181Q9P0P0 153 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms