RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 CTDSPL2Q05D32 466 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 PTPAQ15257 358 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 DDB1Q16531 1140 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 DPCR1Q3MIW9 517 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 CEP135Q66GS9 1140 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 FILIP1Q7Z7B0 1213 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 KRI1Q8N9T8 703 aaKnown RBP12.6□□□□□ -0.39
RFX3-211ENST00000458034 CCDC112Q8NEF3 446 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 PHKBQ93100 1093 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 C16orf45Q96MC5 204 aaPredicted RBP12.6□□□□□ -0.39
RFX3-211ENST00000458034 CCDC94Q9BW85 323 aaPredicted RBP12.6□□□□□ -0.39
RFX3-211ENST00000458034 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
RFX3-211ENST00000458034 BCL2L12Q9HB09 334 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 TOMM22Q9NS69 142 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 LRP2BPQ9P2M1 347 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 DACH1Q9UI36 760 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 TUBE1Q9UJT0 475 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 MYH2Q9UKX2 1941 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 MROH7-TTC4A0A0A0MT08 1334 aa12.6□□□□□ -0.39
RFX3-211ENST00000458034 MAST2Q6P0Q8 1798 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 RGL2O15211 777 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 WDHD1O75717 1129 aaPredicted RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 NTSR2O95665 410 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 MMP1P03956 469 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 PCP11498 1178 aaKnown RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 RXRAP19793 462 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 MARCKSP29966 332 aaPredicted RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 AKAP17AQ02040 695 aaKnown RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 PTPN14Q15678 1187 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 RILPL1Q5EBL4 403 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 RRP12Q5JTH9 1297 aaKnown RBP12.59□□□□□ -0.39
RFX3-211ENST00000458034 NOSTRINQ8IVI9 506 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 FBXW7Q969H0 707 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 MAP3K14Q99558 947 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 UBAC1Q9BSL1 405 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 ZSWIM5Q9P217 1185 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 ANAPC4Q9UJX5 808 aa12.59□□□□□ -0.39
RFX3-211ENST00000458034 NIP7Q9Y221 180 aaKnown RBP eCLIP12.59□□□□□ -0.39
RFX3-211ENST00000458034 LAMB1P07942 1786 aa12.58□□□□□ -0.39
RFX3-211ENST00000458034 SCN7AQ01118 1682 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 MYH14Q7Z406 1995 aaKnown RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 LOC102724428A0A0B4J2F2 783 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 MAGEB6P1A0A0J9YX57 407 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 RANBP6O60518 1105 aaKnown RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 CYP7A1P22680 504 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 SFPQP23246 707 aaKnown RBP eCLIP12.58□□□□□ -0.4
RFX3-211ENST00000458034 SIK1P57059 783 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 CCZ1BP86790 482 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 CCZ1P86791 482 aaPredicted RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 MYL5Q02045 173 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 CHRNDQ07001 517 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 KANK3Q6NY19 840 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 TMED8Q6PL24 325 aaPredicted RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 SHC4Q6S5L8 630 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 TMC6Q7Z403 805 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 LCORLQ8N3X6 602 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 CNNM3Q8NE01 707 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 ESR2Q92731 530 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 AIFM3Q96NN9 605 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 SEC31BQ9NQW1 1179 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 GJB4Q9NTQ9 266 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 FAM217BQ9NTX9 383 aaPredicted RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 IFNKQ9P0W0 207 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 MORC2Q9Y6X9 1032 aaPredicted RBP12.58□□□□□ -0.4
RFX3-211ENST00000458034 SPATA31A1Q5TZJ5 1347 aa12.58□□□□□ -0.4
RFX3-211ENST00000458034 CCDC88AQ3V6T2 1871 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 DUOX1Q9NRD9 1551 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 A0A0G2JS52 829 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 PSDA5PKW4 1024 aaPredicted RBP12.57□□□□□ -0.4
RFX3-211ENST00000458034 FAM177BA6PVY3 158 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 BIN1O00499 593 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 BMP15O95972 392 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 CALM1P0DP23 149 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 CALM2P0DP24 149 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 CALM3P0DP25 149 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 BCAMP50895 628 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 FANCCQ00597 558 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 PPARAQ07869 468 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 UBE4AQ14139 1066 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 CLEC4GQ6UXB4 293 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 KRBA2Q6ZNG9 492 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 ANKRD18AQ8IVF6 992 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 ZNF654Q8IZM8 581 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 PDCL2Q8N4E4 241 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 ANKRD7Q92527 254 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 PHF12Q96QT6 1004 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 RNF26Q9BY78 433 aaPredicted RBP12.57□□□□□ -0.4
RFX3-211ENST00000458034 XPO4Q9C0E2 1151 aaKnown RBP12.57□□□□□ -0.4
RFX3-211ENST00000458034 RBM28Q9NW13 759 aaKnown RBP12.57□□□□□ -0.4
RFX3-211ENST00000458034 KCNH3Q9ULD8 1083 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 DENND2AQ9ULE3 1009 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 BCL9LQ86UU0 1499 aa12.57□□□□□ -0.4
RFX3-211ENST00000458034 SEMA3EO15041 775 aa12.56□□□□□ -0.4
RFX3-211ENST00000458034 CAVIN4Q5BKX8 364 aa12.56□□□□□ -0.4
RFX3-211ENST00000458034 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
RFX3-211ENST00000458034 NYAP1Q6ZVC0 841 aa12.56□□□□□ -0.4
RFX3-211ENST00000458034 DIS3L2Q8IYB7 885 aaKnown RBP12.56□□□□□ -0.4
RFX3-211ENST00000458034 CCAR2Q8N163 923 aaKnown RBP12.56□□□□□ -0.4
RFX3-211ENST00000458034 ZNF710Q8N1W2 664 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms