RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SIPA1L1O43166 1804 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 GPR75-ASB3A0A0A6YYF3 556 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 TCRBV5S4A2TA0A5A2 114 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 WNT10BO00744 389 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 RNF113AO15541 343 aaKnown RBP10.55□□□□□ -0.72
SYNE1-214ENST00000454018 BAG3O95817 575 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 PLCG2P16885 1265 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 SDSP20132 328 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 CYP7A1P22680 504 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 PTCD2Q8WV60 388 aaKnown RBP10.55□□□□□ -0.72
SYNE1-214ENST00000454018 APPBP2Q92624 585 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 RRAGCQ9HB90 399 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 ATAD5Q96QE3 1844 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 PITPNM2Q9BZ72 1349 aa10.55□□□□□ -0.72
SYNE1-214ENST00000454018 EGFRP00533 1210 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 BTDP43251 543 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 APOBEC3HQ6NTF7 200 aaKnown RBP10.54□□□□□ -0.72
SYNE1-214ENST00000454018 ADGRA1Q86SQ6 560 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 EPAS1Q99814 870 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 DIAPH3Q9NSV4 1193 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 TMOD2Q9NZR1 351 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 COL2A1P02458 1487 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-214ENST00000454018 OTOFQ9HC10 1997 aa10.54□□□□□ -0.72
SYNE1-214ENST00000454018 PPP4CP60510 307 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 NBPF9Q3BBW0 867 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 EAPPQ56P03 285 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 APOBEC3FQ8IUX4 373 aaKnown RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 ZNF784Q8NCA9 323 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 PRMT6Q96LA8 375 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 TBC1D2Q9BYX2 928 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 GZF1Q9H116 711 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 AATFQ9NY61 560 aaKnown RBP eCLIP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 GGA3Q9NZ52 723 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 PCDHAC2Q9Y5I4 1007 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 RAD50Q92878 1312 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 RPAP1Q9BWH6 1393 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 PAPPA2Q9BXP8 1791 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 MAGEB6P1A0A0J9YX57 407 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 HIRAP54198 1017 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 TNFAIP1Q13829 316 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 ZMYM1Q5SVZ6 1142 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 FKBP1CQ5VVH2 108 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 LDHDQ86WU2 507 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 MIGA1Q8NAN2 632 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 AIDAQ96BJ3 306 aa10.53□□□□□ -0.72
SYNE1-214ENST00000454018 RIOK1Q9BRS2 568 aaKnown RBP10.53□□□□□ -0.72
SYNE1-214ENST00000454018 MBD4O95243 580 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 RHBDL3P58872 404 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 TMCO4Q5TGY1 634 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 ANGEL2Q5VTE6 544 aaKnown RBP10.52□□□□□ -0.73
SYNE1-214ENST00000454018 CDC42EP5Q6NZY7 148 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 CASC1Q6TDU7 716 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 TDRD3Q9H7E2 651 aaKnown RBP10.52□□□□□ -0.73
SYNE1-214ENST00000454018 GDPD2Q9HCC8 539 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 HELLSQ9NRZ9 838 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 ZNF70Q9UC06 446 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-214ENST00000454018 PGAP2Q9UHJ9 254 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 MTMR7Q9Y216 660 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 PCDHGA10Q9Y5H3 936 aa10.52□□□□□ -0.73
SYNE1-214ENST00000454018 A0A0D9SFI3 127 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 CLRN2A0PK11 232 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 GPAA1O43292 621 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 CDC45O75419 566 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 CHGBP05060 677 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 TNNI2P48788 182 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 MFAP1P55081 439 aaKnown RBP10.51□□□□□ -0.73
SYNE1-214ENST00000454018 NMIQ13287 307 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-214ENST00000454018 IER5LQ5T953 404 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 TEX11Q8IYF3 940 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 LCORLQ8N3X6 602 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 RUFY2Q8WXA3 655 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 OSBP2Q969R2 916 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 DCPSQ96C86 337 aaKnown RBP10.51□□□□□ -0.73
SYNE1-214ENST00000454018 IDI2Q9BXS1 227 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 CRNKL1Q9BZJ0 848 aaKnown RBP10.51□□□□□ -0.73
SYNE1-214ENST00000454018 PUS7LQ9H0K6 701 aaKnown RBP10.51□□□□□ -0.73
SYNE1-214ENST00000454018 VEZTQ9HBM0 779 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 USP40Q9NVE5 1235 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 LIMD1Q9UGP4 676 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 PPP2R3BQ9Y5P8 575 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 DOCK1Q14185 1865 aa10.51□□□□□ -0.73
SYNE1-214ENST00000454018 M0R2C6 588 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 WDHD1O75717 1129 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-214ENST00000454018 OATP04181 439 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 GNAT2P19087 354 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 CHMLP26374 656 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 DYNLL1P63167 89 aaKnown RBP10.5□□□□□ -0.73
SYNE1-214ENST00000454018 SLFNL1Q499Z3 407 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 MCMDC2Q4G0Z9 681 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 TMEM259Q4ZIN3 620 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 FAM83AQ86UY5 434 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 SULF1Q8IWU6 871 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 PXYLP1Q8TE99 480 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 SH3RF3Q8TEJ3 882 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-214ENST00000454018 FAM227BQ96M60 508 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 ARMT1Q9H993 441 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 ASTN2O75129 1339 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-214ENST00000454018 CCDC171Q6TFL3 1326 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 ATRNL1Q5VV63 1379 aa10.5□□□□□ -0.73
SYNE1-214ENST00000454018 ATMINO43313 823 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms