RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 HLA-DOAP06340 250 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 PTH1RQ03431 593 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 SUPT20HL1Q3ZLR7 823 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 C12orf60Q5U649 245 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 SMC1BQ8NDV3 1235 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 CSRNP1Q96S65 589 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 EHD4Q9H223 541 aa13.81□□□□□ -0.2
SCN9A-204ENST00000452182 TBC1D12O60347 775 aa13.8□□□□□ -0.2
SCN9A-204ENST00000452182 POLR3DP05423 398 aaPredicted RBP13.8□□□□□ -0.2
SCN9A-204ENST00000452182 MAP3K10Q02779 954 aa13.8□□□□□ -0.2
SCN9A-204ENST00000452182 FOXP4Q8IVH2 680 aaPredicted RBP13.8□□□□□ -0.2
SCN9A-204ENST00000452182 ZSCAN29Q8IWY8 852 aaPredicted RBP13.8□□□□□ -0.2
SCN9A-204ENST00000452182 SAP30BPQ9UHR5 308 aaKnown RBP13.8□□□□□ -0.2
SCN9A-204ENST00000452182 ANAPC4Q9UJX5 808 aa13.8□□□□□ -0.2
SCN9A-204ENST00000452182 ROBO3Q96MS0 1386 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 PLCD1P51178 756 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 NBPF12Q5TAG4 269 aaPredicted RBP13.79□□□□□ -0.2
SCN9A-204ENST00000452182 SPDYE1Q8NFV5 336 aaPredicted RBP13.79□□□□□ -0.2
SCN9A-204ENST00000452182 CDCA5Q96FF9 252 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 HERC5Q9UII4 1024 aaKnown RBP13.79□□□□□ -0.2
SCN9A-204ENST00000452182 SERPINB13Q9UIV8 391 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 PLCB2Q00722 1185 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 GABPAQ06546 454 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 FSTL1Q12841 308 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 CDAN1Q8IWY9 1227 aa13.79□□□□□ -0.2
SCN9A-204ENST00000452182 RBM8AQ9Y5S9 174 aaKnown RBP13.79□□□□□ -0.2
SCN9A-204ENST00000452182 SSC5DA1L4H1 1573 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 TRPM7Q96QT4 1865 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 ZNF213O14771 459 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 NF2P35240 595 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 PPARAQ07869 468 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 NECTIN1Q15223 517 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 IMMTQ16891 758 aaKnown RBP13.78□□□□□ -0.2
SCN9A-204ENST00000452182 PRAMEF18Q5VWM3 479 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 DCAF15Q66K64 600 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 USP26Q9BXU7 913 aa13.78□□□□□ -0.2
SCN9A-204ENST00000452182 PASKQ96RG2 1323 aa13.77□□□□□ -0.2
SCN9A-204ENST00000452182 CYP2D7A0A087X1C5 515 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 MINDY4BA8MYZ0 360 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 SLC3A2P08195 630 aaKnown RBP13.77□□□□□ -0.21
SCN9A-204ENST00000452182 CYP2D6P10635 497 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 PCP11498 1178 aaKnown RBP13.77□□□□□ -0.21
SCN9A-204ENST00000452182 DLK2Q6UY11 383 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 C16orf86Q6ZW13 317 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 SWAP70Q9UH65 585 aa13.77□□□□□ -0.21
SCN9A-204ENST00000452182 TRAF5O00463 557 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 SEC24BO95487 1268 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 CYP21A2P08686 494 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 FGRP09769 529 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 BACH2Q9BYV9 841 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 DNAJC18Q9H819 358 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 ZNF287Q9HBT7 754 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 MYH8P13535 1937 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 PAPPA2Q9BXP8 1791 aa13.76□□□□□ -0.21
SCN9A-204ENST00000452182 PPP1R12BO60237 982 aaPredicted RBP13.75□□□□□ -0.21
SCN9A-204ENST00000452182 HSPA4P34932 840 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 NT5C2P49902 561 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 FKBP1BP68106 108 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 EVX2Q03828 476 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 PDE4BQ07343 736 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 MAP3K11Q16584 847 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 SLC4A8Q2Y0W8 1093 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 RNF20Q5VTR2 975 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 TATDN1Q6P1N9 297 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 CRACR2BQ8N4Y2 399 aaPredicted RBP13.75□□□□□ -0.21
SCN9A-204ENST00000452182 KCNB2Q92953 911 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 NBPF3Q9H094 633 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 SMIM22K7EJ46 135 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 TSGA10IPQ3SY00 556 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 CREB3L3Q68CJ9 461 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 MIGA2Q7L4E1 593 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 STAG1Q8WVM7 1258 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 TRIM34Q9BYJ4 488 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 ZNF341Q9BYN7 854 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 RNF41Q9H4P4 317 aaPredicted RBP13.75□□□□□ -0.21
SCN9A-204ENST00000452182 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.75□□□□□ -0.21
SCN9A-204ENST00000452182 ZNF112Q9UJU3 913 aa13.75□□□□□ -0.21
SCN9A-204ENST00000452182 UNCXA6NJT0 531 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 PHF20L1A8MW92 1017 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 SLC27A2O14975 620 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 USP2O75604 605 aaPredicted RBP13.74□□□□□ -0.21
SCN9A-204ENST00000452182 SHMT1P34896 483 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 CDK8P49336 464 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 HAND2P61296 217 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 CTDSPL2Q05D32 466 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 AKNAD1Q5T1N1 836 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 KLRG1Q96E93 195 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 DYNLL2Q96FJ2 89 aa13.74□□□□□ -0.21
SCN9A-204ENST00000452182 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.74□□□□□ -0.21
SCN9A-204ENST00000452182 ORC4O43929 436 aa13.73□□□□□ -0.21
SCN9A-204ENST00000452182 ZKSCAN1P17029 563 aaPredicted RBP13.73□□□□□ -0.21
SCN9A-204ENST00000452182 FMR1Q06787 632 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCN9A-204ENST00000452182 CST9Q5W186 159 aa13.73□□□□□ -0.21
SCN9A-204ENST00000452182 MFSD6Q6ZSS7 791 aa13.73□□□□□ -0.21
SCN9A-204ENST00000452182 TBC1D10CQ8IV04 446 aa13.73□□□□□ -0.21
SCN9A-204ENST00000452182 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCN9A-204ENST00000452182 CCDC17Q96LX7 622 aa13.73□□□□□ -0.21
SCN9A-204ENST00000452182 FAM196BA6NMK8 535 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 CELF2O95319 508 aaKnown RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 SLURP2P0DP57 97 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms