RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 CRKP46108 304 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 EVCP57679 992 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 ST3GAL1Q11201 340 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 RAB3GAP1Q15042 981 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 C12orf60Q5U649 245 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 GTF3C6Q969F1 213 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 GPHNQ9NQX3 736 aaPredicted RBP9.47□□□□□ -0.89
CCDC39-201ENST00000442201 MYO3BQ8WXR4 1341 aa9.47□□□□□ -0.89
CCDC39-201ENST00000442201 IFIT3O14879 490 aaKnown RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 PFKFB2O60825 505 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 POLR3DP05423 398 aaPredicted RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 CYP2D6P10635 497 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 PDE4BQ07343 736 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 MTA3Q9BTC8 594 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 ZNRF3Q9ULT6 936 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 KLF18A0A0U1RQI7 1052 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 ERICH2A1L162 156 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 SMIM22K7EJ46 135 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 TULP1O00294 542 aaPredicted RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 SH2B2O14492 632 aaPredicted RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 FGRP09769 529 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 PDIA3P30101 505 aaKnown RBP9.46□□□□□ -0.89
CCDC39-201ENST00000442201 TMEM67Q5HYA8 995 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 JDP2Q8WYK2 163 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 ZDHHC15Q96MV8 337 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 USP40Q9NVE5 1235 aa9.46□□□□□ -0.89
CCDC39-201ENST00000442201 FLT1P17948 1338 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 TIAM2Q8IVF5 1701 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 KIAA1551Q9HCM1 1747 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 CHD4Q14839 1912 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 ORC4O43929 436 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 RANBP6O60518 1105 aaKnown RBP9.46□□□□□ -0.9
CCDC39-201ENST00000442201 RAD17O75943 681 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 RBM5P52756 815 aaKnown RBP eCLIP9.46□□□□□ -0.9
CCDC39-201ENST00000442201 APOBEC3HQ6NTF7 200 aaKnown RBP9.46□□□□□ -0.9
CCDC39-201ENST00000442201 NLGN2Q8NFZ4 835 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 NKX2-3Q8TAU0 364 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 IGDCC4Q8TDY8 1250 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 UBAC1Q9BSL1 405 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 SERPINA10Q9UK55 444 aa9.46□□□□□ -0.9
CCDC39-201ENST00000442201 NFKBIEO00221 500 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 DYNC1I1O14576 645 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 PRDM1O75626 825 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 GJB2P29033 226 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 LIFRP42702 1097 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 NT5C2P49902 561 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 RSBN1LQ6PCB5 846 aaPredicted RBP9.45□□□□□ -0.9
CCDC39-201ENST00000442201 SAP30BPQ9UHR5 308 aaKnown RBP9.45□□□□□ -0.9
CCDC39-201ENST00000442201 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.45□□□□□ -0.9
CCDC39-201ENST00000442201 LAMA4Q16363 1823 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 GOLGA8BA8MQT2 603 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 VIL1P09327 827 aaKnown RBP9.45□□□□□ -0.9
CCDC39-201ENST00000442201 SCRN1Q12765 414 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 SLC4A8Q2Y0W8 1093 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 CDC42EP5Q6NZY7 148 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 NFXL1Q6ZNB6 911 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 SGMS1Q86VZ5 419 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 IQCA1Q86XH1 822 aa9.45□□□□□ -0.9
CCDC39-201ENST00000442201 PSMD14O00487 310 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 DHX16O60231 1041 aaKnown RBP9.44□□□□□ -0.9
CCDC39-201ENST00000442201 CCT2P78371 535 aaKnown RBP9.44□□□□□ -0.9
CCDC39-201ENST00000442201 EVX2Q03828 476 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 PICALMQ13492 652 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 PKP1Q13835 747 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 TMTC2Q8N394 836 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 TNPO1Q92973 898 aaKnown RBP9.44□□□□□ -0.9
CCDC39-201ENST00000442201 LLPHQ9BRT6 129 aaKnown RBP9.44□□□□□ -0.9
CCDC39-201ENST00000442201 LY9Q9HBG7 655 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 ZNF287Q9HBT7 754 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 LTBP3Q9NS15 1303 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 CCDC69A6NI79 296 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 WDHD1O75717 1129 aaPredicted RBP9.44□□□□□ -0.9
CCDC39-201ENST00000442201 WTAPQ15007 396 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 OGFOD1Q8N543 542 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 ZKSCAN3Q9BRR0 538 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 HDAC9Q9UKV0 1011 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 ROBO3Q96MS0 1386 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 MYH2Q9UKX2 1941 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 PLCD1P51178 756 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 APOA5Q6Q788 366 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 SYNE3Q6ZMZ3 975 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 TTC6Q86TZ1 520 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 MKNK2Q9HBH9 465 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 SLC12A7Q9Y666 1083 aa9.44□□□□□ -0.9
CCDC39-201ENST00000442201 TSPY2A6NKD2 308 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 PDCP20941 246 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 CXCL9Q07325 125 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ILDR2Q71H61 639 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 DYNLL2Q96FJ2 89 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 GBP4Q96PP9 640 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 NCOA5Q9HCD5 579 aaKnown RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 PRDM10Q9NQV6 1147 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 KCNG1Q9UIX4 513 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 TNKSO95271 1327 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 WDR33Q9C0J8 1336 aaKnown RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ZBTB43O43298 467 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 BRD1O95696 1058 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 SYT1P21579 422 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 PSEN1P49768 467 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms