RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ERLIN2O94905 339 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 TXKP42681 527 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 NBPF10Q6P3W6 841 aaKnown RBP13.93□□□□□ -0.18
TCOF1-205ENST00000439160 CERS3Q8IU89 383 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 NBPF15Q8N660 670 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 STAMQ92783 540 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 AGLP35573 1532 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 LAMC1P11047 1609 aa13.93□□□□□ -0.18
TCOF1-205ENST00000439160 SERPINB2P05120 415 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 ATP2B4P23634 1241 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 ARID4AP29374 1257 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-205ENST00000439160 ZSCAN10Q96SZ4 725 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-205ENST00000439160 MYO3AQ8NEV4 1616 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 CCNT1O60563 726 aaKnown RBP13.92□□□□□ -0.18
TCOF1-205ENST00000439160 PDE6BP35913 854 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 TMCO3Q6UWJ1 677 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 SEPT12Q8IYM1 358 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 NLGN1Q8N2Q7 840 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 PKD2L1Q9P0L9 805 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 ZBTB21Q9ULJ3 1066 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 OVOS2A0A0J9YW53 1432 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 CUTAO60888 179 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 OVOS2Q6IE36 1432 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 TEKT1Q969V4 418 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 WDHD1O75717 1129 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-205ENST00000439160 ADD2P35612 726 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 DYNLL1P63167 89 aaKnown RBP13.92□□□□□ -0.18
TCOF1-205ENST00000439160 SP4Q02446 784 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 DNAI1Q9UI46 699 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 CLEC11AQ9Y240 323 aa13.92□□□□□ -0.18
TCOF1-205ENST00000439160 CCDC102AQ96A19 550 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.91□□□□□ -0.185e-7■■■□□ 16.3
TCOF1-205ENST00000439160 NOP2P46087 812 aaKnown RBP13.91□□□□□ -0.18
TCOF1-205ENST00000439160 RASGRF1Q13972 1273 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
TCOF1-205ENST00000439160 BTBD18B2RXH4 712 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 KCNQ2O43526 872 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 ECM2O94769 699 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-205ENST00000439160 BTDP43251 543 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 C2CD5Q86YS7 1000 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 PNMA1Q8ND90 353 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 CBX8Q9HC52 389 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 CRB1P82279 1406 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 POTEJP0CG39 1038 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 GOLGA8HP0CJ92 632 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 BICD1Q96G01 975 aa13.91□□□□□ -0.18
TCOF1-205ENST00000439160 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.91□□□□□ -0.18
TCOF1-205ENST00000439160 DLC1Q96QB1 1528 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 GOLGA6L9A6NEM1 432 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 LARGE1O95461 756 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 KRT27Q7Z3Y8 459 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 GOLGA6L10A6NI86 522 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 EIF3JO75822 258 aaKnown RBP13.9□□□□□ -0.18
TCOF1-205ENST00000439160 PAFAH1B1P43034 410 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 ZHX1Q9UKY1 873 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-205ENST00000439160 XDHP47989 1333 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 SPDYE4A6NLX3 237 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 BAG6P46379 1132 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 ARID5AQ03989 594 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 NECTIN1Q15223 517 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 NONOQ15233 471 aaKnown RBP eCLIP13.9□□□□□ -0.18
TCOF1-205ENST00000439160 LCORLQ8N3X6 602 aa13.9□□□□□ -0.18
TCOF1-205ENST00000439160 PIH1D3Q9NQM4 214 aaKnown RBP13.9□□□□□ -0.18
TCOF1-205ENST00000439160 PTPRUQ92729 1446 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 TMCO5BA8MYB1 307 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 NR1I2O75469 434 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 CCT6AP40227 531 aaKnown RBP13.89□□□□□ -0.19
TCOF1-205ENST00000439160 UBXN1Q04323 297 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 DLGAP5Q15398 846 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 CYP19A1P11511 503 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-205ENST00000439160 USH1GQ495M9 461 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 ARHGEF10LQ9HCE6 1279 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 JADE2Q9NQC1 790 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 MCAMP43121 646 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 PLCD1P51178 756 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 TAF3Q5VWG9 929 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 APOA5Q6Q788 366 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 NOSTRINQ8IVI9 506 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 CPXCR1Q8N123 301 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 FLAD1Q8NFF5 587 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 FBXO18Q8NFZ0 1043 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 GPT2Q8TD30 523 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 ZMYM6O95789 1325 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 CUL4AQ13619 759 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 ADGRB1O14514 1584 aa13.89□□□□□ -0.19
TCOF1-205ENST00000439160 CHMP2AO43633 222 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 SV2BQ7L1I2 683 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 SH2D4AQ9H788 454 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 PRKG1Q13976 671 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 CCDC174Q6PII3 467 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 RNF216Q9NWF9 866 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-205ENST00000439160 NRXN1Q9ULB1 1477 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 MACROD2A1Z1Q3 448 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 FAM13AO94988 1023 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 ADCY7P51828 1080 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 LRRC47Q8N1G4 583 aaKnown RBP13.88□□□□□ -0.19
TCOF1-205ENST00000439160 DRC1Q96MC2 740 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 GPHNQ9NQX3 736 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-205ENST00000439160 LEMD3Q9Y2U8 911 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms