RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 DGKZQ13574 1117 aa18.38■□□□□ 0.53
LIMS3-201ENST00000437679 FOXP4Q8IVH2 680 aaPredicted RBP18.38■□□□□ 0.53
LIMS3-201ENST00000437679 CRACR2BQ8N4Y2 399 aaPredicted RBP18.38■□□□□ 0.53
LIMS3-201ENST00000437679 RIOK1Q9BRS2 568 aaKnown RBP18.38■□□□□ 0.53
LIMS3-201ENST00000437679 CRNKL1Q9BZJ0 848 aaKnown RBP18.38■□□□□ 0.53
LIMS3-201ENST00000437679 R3HDMLQ9H3Y0 253 aa18.38■□□□□ 0.53
LIMS3-201ENST00000437679 PALD1Q9ULE6 856 aa18.38■□□□□ 0.53
LIMS3-201ENST00000437679 KCNH4Q9UQ05 1017 aa18.38■□□□□ 0.53
LIMS3-201ENST00000437679 DOCK1Q14185 1865 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 MYH1P12882 1939 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 TCRBV5S4A2TA0A5A2 114 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 CXCL11O14625 94 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 FKTNO75072 461 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 PTPRAP18433 802 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ADD2P35612 726 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 CRHR2Q13324 411 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 TAF1CQ15572 869 aaPredicted RBP18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ANKRD45Q5TZF3 282 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ZSCAN25Q6NSZ9 544 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 FAM43AQ8N2R8 423 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ZFYVE28Q9HCC9 887 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ZCCHC17Q9NP64 241 aaKnown RBP18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ZHX2Q9Y6X8 837 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 MYH7P12883 1935 aa18.37■□□□□ 0.53
LIMS3-201ENST00000437679 ERC2O15083 957 aa18.36■□□□□ 0.53
LIMS3-201ENST00000437679 TSHZ3Q63HK5 1081 aa18.36■□□□□ 0.53
LIMS3-201ENST00000437679 TTC41PQ6P2S7 1318 aa18.36■□□□□ 0.53
LIMS3-201ENST00000437679 CTU1Q7Z7A3 348 aaKnown RBP18.36■□□□□ 0.53
LIMS3-201ENST00000437679 EXOC6Q8TAG9 804 aa18.36■□□□□ 0.53
LIMS3-201ENST00000437679 MCOLN1Q9GZU1 580 aa18.36■□□□□ 0.53
LIMS3-201ENST00000437679 BTBD19C9JJ37 291 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 CAPN15O75808 1086 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 CAP2P40123 477 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 UBE3CQ15386 1083 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 SLC4A8Q2Y0W8 1093 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 TTC6Q86TZ1 520 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 METTL16Q86W50 562 aaKnown RBP18.35■□□□□ 0.53
LIMS3-201ENST00000437679 RWDD1Q9H446 243 aaPredicted RBP18.35■□□□□ 0.53
LIMS3-201ENST00000437679 SIPA1L1O43166 1804 aa18.35■□□□□ 0.53
LIMS3-201ENST00000437679 LCORLQ8N3X6 602 aa18.34■□□□□ 0.53
LIMS3-201ENST00000437679 ABHD8Q96I13 439 aa18.34■□□□□ 0.53
LIMS3-201ENST00000437679 AFG3L2Q9Y4W6 797 aa18.34■□□□□ 0.53
LIMS3-201ENST00000437679 ATAD5Q96QE3 1844 aa18.33■□□□□ 0.53
LIMS3-201ENST00000437679 GLRX3O76003 335 aaKnown RBP18.33■□□□□ 0.52
LIMS3-201ENST00000437679 MBD4O95243 580 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 POLR3DP05423 398 aaPredicted RBP18.33■□□□□ 0.52
LIMS3-201ENST00000437679 MX1P20591 662 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 FASTKD5Q7L8L6 764 aaKnown RBP18.33■□□□□ 0.52
LIMS3-201ENST00000437679 ANKRD23Q86SG2 305 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 KBTBD3Q8NAB2 608 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 TBC1D2Q9BYX2 928 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 ARMT1Q9H993 441 aa18.33■□□□□ 0.52
LIMS3-201ENST00000437679 A0A0G2JLL6 359 aaPredicted RBP18.32■□□□□ 0.52
LIMS3-201ENST00000437679 TRIM75PA6NK02 468 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 RRP1BQ14684 758 aaKnown RBP18.32■□□□□ 0.52
LIMS3-201ENST00000437679 SLFNL1Q499Z3 407 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 PRRT2Q7Z6L0 340 aaPredicted RBP18.32■□□□□ 0.52
LIMS3-201ENST00000437679 OTUD7AQ8TE49 926 aaPredicted RBP18.32■□□□□ 0.52
LIMS3-201ENST00000437679 EHD4Q9H223 541 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 DNAJC18Q9H819 358 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 MCM9Q9NXL9 1143 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.32■□□□□ 0.52
LIMS3-201ENST00000437679 SERPINB13Q9UIV8 391 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 NAV1Q8NEY1 1877 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 PHIPQ8WWQ0 1821 aa18.32■□□□□ 0.52
LIMS3-201ENST00000437679 USP17L5A8MUK1 530 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 PDHXO00330 501 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 ASNSP08243 561 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 SP3Q02447 781 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 PKN2Q16513 984 aaKnown RBP18.31■□□□□ 0.52
LIMS3-201ENST00000437679 LRRFIP1Q32MZ4 808 aaKnown RBP18.31■□□□□ 0.52
LIMS3-201ENST00000437679 GADL1Q6ZQY3 521 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 CCDC84Q86UT8 332 aaPredicted RBP18.31■□□□□ 0.52
LIMS3-201ENST00000437679 PI4K2BQ8TCG2 481 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 SDR42E1Q8WUS8 393 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 ERO1AQ96HE7 468 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 AS3MTQ9HBK9 375 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 GINM1Q9NU53 330 aa18.31■□□□□ 0.52
LIMS3-201ENST00000437679 CHGBP05060 677 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 ZFYP08048 801 aaPredicted RBP18.3■□□□□ 0.52
LIMS3-201ENST00000437679 SPP2Q13103 211 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 MOGSQ13724 837 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 ZNF280CQ8ND82 737 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 DDRGK1Q96HY6 314 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 DCP1AQ9NPI6 582 aaPredicted RBP18.3■□□□□ 0.52
LIMS3-201ENST00000437679 ATP8A2Q9NTI2 1148 aa18.3■□□□□ 0.52
LIMS3-201ENST00000437679 PTPRFP10586 1907 aa18.29■□□□□ 0.52
LIMS3-201ENST00000437679 RNF113AO15541 343 aaKnown RBP18.29■□□□□ 0.52
LIMS3-201ENST00000437679 TLR2O60603 784 aa18.29■□□□□ 0.52
LIMS3-201ENST00000437679 GDF11O95390 407 aa18.29■□□□□ 0.52
LIMS3-201ENST00000437679 PLCD1P51178 756 aa18.29■□□□□ 0.52
LIMS3-201ENST00000437679 SMC5Q8IY18 1101 aa18.29■□□□□ 0.52
LIMS3-201ENST00000437679 PUS7LQ9H0K6 701 aaKnown RBP18.29■□□□□ 0.52
LIMS3-201ENST00000437679 SALL3Q9BXA9 1300 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 PRKAB2O43741 272 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 B4GALNT3Q6L9W6 998 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 GPAT2Q6NUI2 795 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 TATDN1Q6P1N9 297 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 AMOTL1Q8IY63 956 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 CD99L2Q8TCZ2 262 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms