RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 SSRP1Q08945 709 aaKnown RBP29.89■■■□□ 2.38
CPNE1-216ENST00000437340 CCDC144CPQ8IYA2 1237 aa29.89■■■□□ 2.38
CPNE1-216ENST00000437340 FAM43AQ8N2R8 423 aa29.89■■■□□ 2.38
CPNE1-216ENST00000437340 CD209Q9NNX6 404 aa29.89■■■□□ 2.38
CPNE1-216ENST00000437340 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.89■■■□□ 2.38
CPNE1-216ENST00000437340 TNKSO95271 1327 aa29.89■■■□□ 2.38
CPNE1-216ENST00000437340 RANBP6O60518 1105 aaKnown RBP29.88■■■□□ 2.37
CPNE1-216ENST00000437340 CERS3Q8IU89 383 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 ZNF654Q8IZM8 581 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 STK11IPQ8N1F8 1099 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 PHKBQ93100 1093 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 ZSCAN10Q96SZ4 725 aaPredicted RBP29.88■■■□□ 2.37
CPNE1-216ENST00000437340 JAG2Q9Y219 1238 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 LTBP1Q14766 1721 aa29.88■■■□□ 2.37
CPNE1-216ENST00000437340 LDHCP07864 332 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 CEBPZQ03701 1054 aaKnown RBP29.87■■■□□ 2.37
CPNE1-216ENST00000437340 MAP3K11Q16584 847 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 IQCA1Q86XH1 822 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 PDLIM2Q96JY6 352 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 POLR3EQ9NVU0 708 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 BAZ2AQ9UIF9 1905 aaKnown RBP29.87■■■□□ 2.37
CPNE1-216ENST00000437340 PPP4CP60510 307 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 MYSM1Q5VVJ2 828 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 RNF214Q8ND24 703 aa29.87■■■□□ 2.37
CPNE1-216ENST00000437340 TRIM44Q96DX7 344 aaPredicted RBP29.87■■■□□ 2.37
CPNE1-216ENST00000437340 CYP2D7A0A087X1C5 515 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 BAG3O95817 575 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 KRT40Q6A162 431 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 SP8Q8IXZ3 490 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 FANCBQ8NB91 859 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 CLSTN2Q9H4D0 955 aa29.86■■■□□ 2.37
CPNE1-216ENST00000437340 C10orf71Q711Q0 1435 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 YEATS4O95619 227 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 RBM43Q6ZSC3 357 aaKnown RBP29.85■■■□□ 2.37
CPNE1-216ENST00000437340 TRIM22Q8IYM9 498 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 TBC1D16Q8TBP0 767 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 MASTLQ96GX5 879 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 FTOQ9C0B1 505 aaKnown RBP eCLIP29.85■■■□□ 2.375e-10■□□□□ 9.7
CPNE1-216ENST00000437340 LAMB1P07942 1786 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 DLEC1Q9Y238 1755 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 CCDC192P0DO97 292 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 TRIM29Q14134 588 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 R3HDM1Q15032 1099 aaKnown RBP29.85■■■□□ 2.37
CPNE1-216ENST00000437340 C2CD5Q86YS7 1000 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 TNMDQ9H2S6 317 aa29.85■■■□□ 2.37
CPNE1-216ENST00000437340 KIF13BQ9NQT8 1826 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 SMIM22K7EJ46 135 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 PPEF1O14829 653 aaPredicted RBP29.84■■■□□ 2.37
CPNE1-216ENST00000437340 ZBTB7AO95365 584 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 ENAHQ8N8S7 591 aaPredicted RBP29.84■■■□□ 2.37
CPNE1-216ENST00000437340 KCNG4Q8TDN1 519 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 GPR101Q96P66 508 aaPredicted RBP29.84■■■□□ 2.37
CPNE1-216ENST00000437340 SLC26A6Q9BXS9 759 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 GJB4Q9NTQ9 266 aa29.84■■■□□ 2.37
CPNE1-216ENST00000437340 MKRN1Q9UHC7 482 aaKnown RBP29.84■■■□□ 2.37
CPNE1-216ENST00000437340 NR1I2O75469 434 aa29.83■■■□□ 2.37
CPNE1-216ENST00000437340 POLR3DP05423 398 aaPredicted RBP29.83■■■□□ 2.37
CPNE1-216ENST00000437340 LINC00301Q8NCQ3 95 aa29.83■■■□□ 2.37
CPNE1-216ENST00000437340 AIFM3Q96NN9 605 aa29.83■■■□□ 2.37
CPNE1-216ENST00000437340 NOL10Q9BSC4 688 aaKnown RBP29.83■■■□□ 2.37
CPNE1-216ENST00000437340 KIF28PB7ZC32 967 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 PDE4BQ07343 736 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 POLLQ9UGP5 575 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 SLX4Q8IY92 1834 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 CALM1P0DP23 149 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 CALM2P0DP24 149 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 CALM3P0DP25 149 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 IFIT1BQ5T764 474 aaKnown RBP29.82■■■□□ 2.36
CPNE1-216ENST00000437340 CRACR2BQ8N4Y2 399 aaPredicted RBP29.82■■■□□ 2.36
CPNE1-216ENST00000437340 TBC1D22AQ8WUA7 517 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 ATP6V0A2Q9Y487 856 aa29.82■■■□□ 2.36
CPNE1-216ENST00000437340 MROH7-TTC4A0A0A0MT08 1334 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 DEXIO95424 95 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 U2AF2P26368 475 aaKnown RBP eCLIP29.81■■■□□ 2.369e-27■■■■□ 22.3
CPNE1-216ENST00000437340 ME1P48163 572 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 CATIPQ7Z7H3 387 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 NBPF11Q86T75 865 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 CCAR1Q8IX12 1150 aaKnown RBP29.81■■■□□ 2.36
CPNE1-216ENST00000437340 MCM9Q9NXL9 1143 aa29.81■■■□□ 2.36
CPNE1-216ENST00000437340 A0A1W2PQ27 194 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 A0A1W2PQ64 194 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 A0A1W2PQD8 194 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 H0YIN7 160 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 PRDM1O75626 825 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 CHRNA5P30532 468 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 ALDH1B1P30837 517 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 ADALQ6DHV7 355 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 ZNF622Q969S3 477 aaKnown RBP eCLIP29.8■■■□□ 2.364e-6■■□□□ 12.1
CPNE1-216ENST00000437340 STK38Q15208 465 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 CCDC73Q6ZRK6 1079 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 NUP133Q8WUM0 1156 aa29.8■■■□□ 2.36
CPNE1-216ENST00000437340 RBM28Q9NW13 759 aaKnown RBP29.8■■■□□ 2.36
CPNE1-216ENST00000437340 MYH2Q9UKX2 1941 aa29.79■■■□□ 2.36
CPNE1-216ENST00000437340 USP5P45974 858 aa29.79■■■□□ 2.36
CPNE1-216ENST00000437340 GRIK5Q16478 980 aa29.79■■■□□ 2.36
CPNE1-216ENST00000437340 C12orf60Q5U649 245 aa29.79■■■□□ 2.36
CPNE1-216ENST00000437340 STYK1Q6J9G0 422 aa29.79■■■□□ 2.36
CPNE1-216ENST00000437340 ECM29Q5VYK3 1845 aa29.78■■■□□ 2.36
CPNE1-216ENST00000437340 CTAGE5O15320 804 aa29.78■■■□□ 2.36
CPNE1-216ENST00000437340 DDAH1O94760 285 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms