RNA–Protein interactions for RNA: ENST00000435953.2

AC004448.3-201, humanhuman

TSL 2 BASIC

Gene AC004448.3, Length 543 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004448.3-201ENST00000435953 CDK8P49336 464 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 GABPAQ06546 454 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 COL9A3Q14050 684 aaPredicted RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 C16orf86Q6ZW13 317 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 RALYLQ86SE5 291 aaKnown RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 APOBEC3FQ8IUX4 373 aaKnown RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 MB21D2Q8IYB1 491 aaPredicted RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 ZNF444Q8N0Y2 327 aaPredicted RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 TMEM39BQ9GZU3 492 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 DEFB129Q9H1M3 183 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 EHD4Q9H223 541 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 ALDH8A1Q9H2A2 487 aaPredicted RBP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 RRAGCQ9HB90 399 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 ZNF287Q9HBT7 754 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 PDRG1Q9NUG6 133 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 ZSWIM5Q9P217 1185 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 SERPINB13Q9UIV8 391 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 TAOK2Q9UL54 1235 aa11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
AC004448.3-201ENST00000435953 SBF1O95248 1867 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 B4E1Z4 1266 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 PRDM1O75626 825 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 MCM5P33992 734 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 NT5C2P49902 561 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 MAP3K10Q02779 954 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 RRP12Q5JTH9 1297 aaKnown RBP11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 PNMA8AQ86V59 439 aaPredicted RBP11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 NKX2-3Q8TAU0 364 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 ESR2Q92731 530 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 DCPSQ96C86 337 aaKnown RBP11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 TEPSINQ96N21 525 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 CSRNP1Q96S65 589 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 TOMM22Q9NS69 142 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 SWAP70Q9UH65 585 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 SCAF8Q9UPN6 1271 aaKnown RBP11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 MYH13Q9UKX3 1938 aa11.68□□□□□ -0.54
AC004448.3-201ENST00000435953 ATRNL1Q5VV63 1379 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 ZNF646O15015 1829 aaPredicted RBP11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 NEDD4P46934 1319 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 PITPNM2Q9BZ72 1349 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 PRC1O43663 620 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 ST18O60284 1047 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 TBC1D12O60347 775 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 RANBP6O60518 1105 aaKnown RBP11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 KDM4AO75164 1064 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 TFAP4Q01664 338 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 CYB5R4Q7L1T6 521 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 CHST3Q7LGC8 479 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 CRACR2BQ8N4Y2 399 aaPredicted RBP11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 SLC44A5Q8NCS7 719 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 SNX21Q969T3 373 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 TTC14Q96N46 770 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 GGA3Q9NZ52 723 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 HERC5Q9UII4 1024 aaKnown RBP11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 MAST2Q6P0Q8 1798 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 ROBO3Q96MS0 1386 aa11.67□□□□□ -0.54
AC004448.3-201ENST00000435953 MYH2Q9UKX2 1941 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 CCDC88AQ3V6T2 1871 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 PSME4Q14997 1843 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 SLURP2P0DP57 97 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 RASA1P20936 1047 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 SHMT1P34896 483 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 ANP32AP39687 249 aaKnown RBP11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 ANTXR2P58335 489 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 EAPPQ56P03 285 aaPredicted RBP11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 FAM47AQ5JRC9 791 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 TATDN1Q6P1N9 297 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 Q6ZUG5 572 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 CDAN1Q8IWY9 1227 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 FBXL16Q8N461 479 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 IGDCC4Q8TDY8 1250 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 TRIM34Q9BYJ4 488 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 PPP2R3BQ9Y5P8 575 aa11.66□□□□□ -0.54
AC004448.3-201ENST00000435953 WDR19Q8NEZ3 1342 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 COL2A1P02458 1487 aaPredicted RBP11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 MYH7P12883 1935 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 DICER1Q9UPY3 1922 aaKnown RBP11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 MCM2P49736 904 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 ANKRD1Q15327 319 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 SUPT20HL1Q3ZLR7 823 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 CERKLQ49MI3 558 aaPredicted RBP11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 NBPF12Q5TAG4 269 aaPredicted RBP11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 PRAMEF18Q5VWM3 479 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 MIGA2Q7L4E1 593 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 USP48Q86UV5 1035 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 SULF1Q8IWU6 871 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 NEDD1Q8NHV4 660 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 HOOK2Q96ED9 719 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 TMEM87BQ96K49 555 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 CCDC17Q96LX7 622 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 TCEANC2Q96MN5 208 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 MTA3Q9BTC8 594 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 LRRC2Q9BYS8 371 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 TCP11L1Q9NUJ3 509 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 CLEC11AQ9Y240 323 aa11.65□□□□□ -0.54
AC004448.3-201ENST00000435953 TSPY2A6NKD2 308 aa11.64□□□□□ -0.55
AC004448.3-201ENST00000435953 FAM196BA6NMK8 535 aa11.64□□□□□ -0.55
AC004448.3-201ENST00000435953 IFIT3O14879 490 aaKnown RBP11.64□□□□□ -0.55
AC004448.3-201ENST00000435953 CD2BP2O95400 341 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms