RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 PITPNM1O00562 1244 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 ABL1P00519 1130 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 CMA1P23946 247 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 SYKP43405 635 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 ADKP55263 362 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 TAF7LQ5H9L4 462 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 RALYLQ86SE5 291 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 SMYD4Q8IYR2 804 aaPredicted RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 PLCD3Q8N3E9 789 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 MIGA1Q8NAN2 632 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 SLC26A6Q9BXS9 759 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 DNAI1Q9UI46 699 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 TUBE1Q9UJT0 475 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 ANGEL1Q9UNK9 670 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 PAXBP1Q9Y5B6 917 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 PCDHB6Q9Y5E3 794 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 NUP98P52948 1817 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 PRDM1O75626 825 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 MBD4O95243 580 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 PDIA4P13667 645 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 CLCN6P51797 869 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 MDM2Q00987 491 aaPredicted RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 IFIT5Q13325 482 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 RASGRF1Q13972 1273 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 RRP12Q5JTH9 1297 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 KLHL34Q8N239 644 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 LCORLQ8N3X6 602 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 KCNG4Q8TDN1 519 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 CHMP4CQ96CF2 233 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 STRBPQ96SI9 672 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 UTP14AQ9BVJ6 771 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 TEX13AQ9BXU3 409 aaPredicted RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 L2HGDHQ9H9P8 463 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 SAMSN1Q9NSI8 373 aaKnown RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 FAM53CQ9NYF3 392 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 OGFRQ9NZT2 677 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 MORC2Q9Y6X9 1032 aaPredicted RBP8.29□□□□□ -1.08
COL28A1-202ENST00000430711 VWA3AA6NCI4 1184 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 PCCAP05165 728 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 VEGFAP15692 232 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 DPYDQ12882 1025 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 RESP18Q5W5W9 173 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 MAGEB6Q8N7X4 407 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 ZBTB38Q8NAP3 1195 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 STAMQ92783 540 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 FHOD1Q9Y613 1164 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 BAZ2AQ9UIF9 1905 aaKnown RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 GOLGA8AA7E2F4 631 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 SLU7O95391 586 aaKnown RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 IL2RBP14784 551 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 CD44P16070 742 aaKnown RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 H2AFXP16104 143 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 SFPQP23246 707 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 CTSWP56202 376 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 NKX1-1Q15270 411 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 SYNE3Q6ZMZ3 975 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 ZNF397Q8NF99 534 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL28A1-202ENST00000430711 BPIFA3Q9BQP9 254 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 CNNM1Q9NRU3 951 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 SERTAD1Q9UHV2 236 aa8.28□□□□□ -1.08
COL28A1-202ENST00000430711 CICQ96RK0 1608 aaPredicted RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 ERICH4A6NGS2 130 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 GSG1L2A8MUP6 293 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 ERVV-2B6SEH9 535 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 IRS4O14654 1257 aaPredicted RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 TEX33O43247 280 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 SASH3O75995 380 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 CAVIN2O95810 425 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 BAG6P46379 1132 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 PLA2G4AP47712 749 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 UBASH3AP57075 661 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 SYCP1Q15431 976 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 CFAP100Q494V2 611 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 TMEM67Q5HYA8 995 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 BRAPQ7Z569 592 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 SDR42E1Q8WUS8 393 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 MRPL44Q9H9J2 332 aaKnown RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 CGNQ9P2M7 1197 aaKnown RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 FBXO2Q9UK22 296 aaPredicted RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 MAN1B1Q9UKM7 699 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 PARP3Q9Y6F1 533 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 ANKRD36CQ5JPF3 1778 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 DOCK2Q92608 1830 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 DISP2A7MBM2 1401 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 COL1A1P02452 1464 aaPredicted RBP8.27□□□□□ -1.09
COL28A1-202ENST00000430711 MYH2Q9UKX2 1941 aa8.27□□□□□ -1.09
COL28A1-202ENST00000430711 BCORQ6W2J9 1755 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 ZBTB43O43298 467 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 PDE8BO95263 885 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 BCAMP50895 628 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 KARSQ15046 597 aaKnown RBP8.26□□□□□ -1.09
COL28A1-202ENST00000430711 ARHGAP29Q52LW3 1261 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 ATL3Q6DD88 541 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 NFXL1Q6ZNB6 911 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 KRBA2Q6ZNG9 492 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 VSTM4Q8IW00 320 aa8.26□□□□□ -1.09
COL28A1-202ENST00000430711 IFNL3Q8IZI9 196 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms