RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CCNA1P78396 465 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 STIM1Q13586 685 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 KIF4BQ2VIQ3 1234 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 TCP11L1Q9NUJ3 509 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 DDX19AQ9NUU7 478 aaKnown RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 V9GYY5 206 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 IQGAP1P46940 1657 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 PDIA4P13667 645 aaKnown RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 GYS1P13807 737 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 PDE6AP16499 860 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 NAP1L1P55209 391 aaKnown RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 SYCP1Q15431 976 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 ANO6Q4KMQ2 910 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 CREB3L3Q68CJ9 461 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 CCDC186Q7Z3E2 898 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 CCDC148Q8NFR7 591 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 WRNIP1Q96S55 665 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 PRKAG2Q9UGJ0 569 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 CEP131Q9UPN4 1083 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 GTF2F1P35269 517 aaKnown RBP eCLIP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 GRIPAP1Q4V328 841 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 PI16Q6UXB8 463 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 MYRIPQ8NFW9 859 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 CHURC1Q8WUH1 139 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 DRC1Q96MC2 740 aa12.14□□□□□ -0.47
TCOF1-204ENST00000427724 TRMT1Q9NXH9 659 aaKnown RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 MAGEC2Q9UBF1 373 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-204ENST00000427724 RAD50Q92878 1312 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 PLSCR1O15162 318 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 SERPINC1P01008 464 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 HSPA4P34932 840 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 SP8Q8IXZ3 490 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 QRICH2Q9H0J4 1663 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 POLR3GO15318 223 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-204ENST00000427724 FAM177A1Q8N128 213 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-204ENST00000427724 FAM200AQ8TCP9 573 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 FAM227BQ96M60 508 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 USP42Q9H9J4 1324 aaKnown RBP12.13□□□□□ -0.47
TCOF1-204ENST00000427724 SEMA3EO15041 775 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 GPSM2P81274 684 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 KCTD2Q14681 263 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 PTF1AQ7RTS3 328 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 TIGD1Q96MW7 591 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 UIMC1Q96RL1 719 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 CALCOCO1Q9P1Z2 691 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 DIP2AQ14689 1571 aa12.13□□□□□ -0.47
TCOF1-204ENST00000427724 MED14O60244 1454 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 CALML3P27482 149 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 LRRC47Q8N1G4 583 aaKnown RBP12.12□□□□□ -0.47
TCOF1-204ENST00000427724 ZNF500O60304 480 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-204ENST00000427724 BICD1Q96G01 975 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 DNAJC25Q9H1X3 360 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 OSBPP22059 807 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 Q6ZUG5 572 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 LUZP1Q86V48 1076 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 ZHX2Q9Y6X8 837 aa12.12□□□□□ -0.47
TCOF1-204ENST00000427724 CAMTA2O94983 1202 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 CELF2O95319 508 aaKnown RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 TYRO3Q06418 890 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 RUFY3Q7L099 469 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 FSIP1Q8NA03 581 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 COPRSQ9NQ92 184 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 BIN1O00499 593 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 GMPSP49915 693 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 NCBP1Q09161 790 aaKnown RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 PTPN14Q15678 1187 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 RRAGCQ9HB90 399 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.11□□□□□ -0.472e-6■■■■■ 145.4
TCOF1-204ENST00000427724 CWC15Q9P013 229 aaKnown RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 CDK12Q9NYV4 1490 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 SPATA31D1Q6ZQQ2 1576 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 PTGS1P23219 599 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 DYNLL1P63167 89 aaKnown RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 SAMD7Q7Z3H4 446 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 ALG1Q9BT22 464 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 CAPN15O75808 1086 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 TRIM21P19474 475 aaKnown RBP12.11□□□□□ -0.47
TCOF1-204ENST00000427724 CRKP46108 304 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 RASSF7Q02833 373 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 SERPINB13Q9UIV8 391 aa12.11□□□□□ -0.47
TCOF1-204ENST00000427724 RASEFQ8IZ41 740 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 NBPF3Q9H094 633 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 HELLSQ9NRZ9 838 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 FBXO3Q9UK99 471 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 SORBS3O60504 671 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 IGKV5-2P06315 115 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 NOM1Q5C9Z4 860 aaKnown RBP12.1□□□□□ -0.47
TCOF1-204ENST00000427724 ERMNQ8TAM6 284 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 SSH3Q8TE77 659 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 CALML4Q96GE6 196 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 OSBPL3Q9H4L5 887 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 GGA3Q9NZ52 723 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 CPDO75976 1380 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 FAM196BA6NMK8 535 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 H7C1W4 665 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 DDNO94850 711 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-204ENST00000427724 TGFB2P61812 414 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 ISM2Q6H9L7 571 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms