RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 EPB41L4AQ9HCS5 686 aaPredicted RBP11.95□□□□□ -0.5
CD44-207ENST00000425428 COL2A1P02458 1487 aaPredicted RBP11.95□□□□□ -0.5
CD44-207ENST00000425428 ERICH2A1L162 156 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 SEC24BO95487 1268 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 EGFRP00533 1210 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 SLC4A8Q2Y0W8 1093 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 CCDC178Q5BJE1 867 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 RRP12Q5JTH9 1297 aaKnown RBP11.95□□□□□ -0.5
CD44-207ENST00000425428 ESR2Q92731 530 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 EHD4Q9H223 541 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 FAM198AQ9UFP1 575 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 ANAPC4Q9UJX5 808 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 PPP1R12BO60237 982 aaPredicted RBP11.94□□□□□ -0.5
CD44-207ENST00000425428 HIRAP54198 1017 aaPredicted RBP11.94□□□□□ -0.5
CD44-207ENST00000425428 STK11IPQ8N1F8 1099 aa11.94□□□□□ -0.5
CD44-207ENST00000425428 TMEM39BQ9GZU3 492 aa11.94□□□□□ -0.5
CD44-207ENST00000425428 CABP5Q9NP86 173 aa11.94□□□□□ -0.5
CD44-207ENST00000425428 DDX4Q9NQI0 724 aaKnown RBP11.94□□□□□ -0.5
CD44-207ENST00000425428 MKRN1Q9UHC7 482 aaKnown RBP11.94□□□□□ -0.5
CD44-207ENST00000425428 ATRNL1Q5VV63 1379 aa11.94□□□□□ -0.5
CD44-207ENST00000425428 RANBP6O60518 1105 aaKnown RBP11.93□□□□□ -0.5
CD44-207ENST00000425428 CYP21A2P08686 494 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 RBM25P49756 843 aaKnown RBP11.93□□□□□ -0.5
CD44-207ENST00000425428 CTDSPL2Q05D32 466 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 TSGA10IPQ3SY00 556 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 BLOC1S2Q6QNY1 142 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 IQCA1Q86XH1 822 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 STAG1Q8WVM7 1258 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 NEK1Q96PY6 1258 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 CYP46A1Q9Y6A2 500 aa11.93□□□□□ -0.5
CD44-207ENST00000425428 TSPY2A6NKD2 308 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 E7EWF7 191 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 ST18O60284 1047 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 TSPY3P0CV98 308 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 TSPY8P0CW00 308 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 MCM5P33992 734 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 TTLL12Q14166 644 aaPredicted RBP11.92□□□□□ -0.5
CD44-207ENST00000425428 CCDC17Q96LX7 622 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 JAKMIP1Q96N16 626 aaKnown RBP11.92□□□□□ -0.5
CD44-207ENST00000425428 TBC1D32Q96NH3 1257 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 UBAC1Q9BSL1 405 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 NMRK2Q9NPI5 230 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 PGAP2Q9UHJ9 254 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 DDTLA6NHG4 134 aaPredicted RBP11.92□□□□□ -0.5
CD44-207ENST00000425428 MPHOSPH10O00566 681 aaKnown RBP11.92□□□□□ -0.5
CD44-207ENST00000425428 TBC1D12O60347 775 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 CASTP20810 708 aaKnown RBP11.92□□□□□ -0.5
CD44-207ENST00000425428 CDK8P49336 464 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 RABEP1Q15276 862 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 C16orf86Q6ZW13 317 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 USP48Q86UV5 1035 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 ZNF341Q9BYN7 854 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 SNX14Q9Y5W7 946 aa11.92□□□□□ -0.5
CD44-207ENST00000425428 CYP2D7A0A087X1C5 515 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 POTECB2RU33 542 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 ORC4O43929 436 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 CYP2D6P10635 497 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 IREB2P48200 963 aaKnown RBP11.91□□□□□ -0.5
CD44-207ENST00000425428 PLCD1P51178 756 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 CERKLQ49MI3 558 aaPredicted RBP11.91□□□□□ -0.5
CD44-207ENST00000425428 CHADLQ6NUI6 762 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 ARMC9Q7Z3E5 817 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 TM6SF1Q9BZW5 370 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 CNTNAP1P78357 1384 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 ROBO3Q96MS0 1386 aa11.91□□□□□ -0.5
CD44-207ENST00000425428 ASTN2O75129 1339 aaPredicted RBP11.9□□□□□ -0.5
CD44-207ENST00000425428 FOXP2O15409 715 aa11.9□□□□□ -0.5
CD44-207ENST00000425428 ANKRD1Q15327 319 aa11.9□□□□□ -0.5
CD44-207ENST00000425428 ZFPM1Q8IX07 1006 aa11.9□□□□□ -0.5
CD44-207ENST00000425428 GINM1Q9NU53 330 aa11.9□□□□□ -0.5
CD44-207ENST00000425428 DDX60LQ5H9U9 1706 aaKnown RBP11.9□□□□□ -0.5
CD44-207ENST00000425428 SYNE3Q6ZMZ3 975 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 MIGA2Q7L4E1 593 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 DHX32Q7L7V1 743 aaKnown RBP11.9□□□□□ -0.51
CD44-207ENST00000425428 TMTC2Q8N394 836 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 SMC1BQ8NDV3 1235 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 KCNB2Q92953 911 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 DYNLL2Q96FJ2 89 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 PICK1Q9NRD5 415 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 DAXXQ9UER7 740 aaPredicted RBP11.9□□□□□ -0.51
CD44-207ENST00000425428 CSADQ9Y600 493 aa11.9□□□□□ -0.51
CD44-207ENST00000425428 B4E1Z4 1266 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 ADM5C9JUS6 153 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 KDM4AO75164 1064 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 PRDM1O75626 825 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 ANP32AP39687 249 aaKnown RBP11.89□□□□□ -0.51
CD44-207ENST00000425428 TFAP4Q01664 338 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 ABCB5Q2M3G0 1257 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 NBPF12Q5TAG4 269 aaPredicted RBP11.89□□□□□ -0.51
CD44-207ENST00000425428 MAP1SQ66K74 1059 aaPredicted RBP11.89□□□□□ -0.51
CD44-207ENST00000425428 RUFY3Q7L099 469 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 TBC1D10CQ8IV04 446 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 C2orf69Q8N8R5 385 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 CHMP4CQ96CF2 233 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 CDCA5Q96FF9 252 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 TMEM87BQ96K49 555 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 MTA3Q9BTC8 594 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 GLIS2Q9BZE0 524 aaPredicted RBP11.89□□□□□ -0.51
CD44-207ENST00000425428 ZNF408Q9H9D4 720 aa11.89□□□□□ -0.51
CD44-207ENST00000425428 PDRG1Q9NUG6 133 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms