RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LRRC2Q9BYS8 371 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 MKNK2Q9HBH9 465 aa20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 CNOT7Q9UIV1 285 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-202ENST00000421922 CACNB3P54284 484 aa20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 ZNF280AP59817 542 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 TMX3Q96JJ7 454 aa20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 TMEM87BQ96K49 555 aa20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 UBAC1Q9BSL1 405 aa20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 DHX36Q9H2U1 1008 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 VEZTQ9HBM0 779 aa20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 DDX4Q9NQI0 724 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 SH2B1Q9NRF2 756 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 NAP1L2Q9ULW6 460 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-202ENST00000421922 CLRN2A0PK11 232 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 ORC4O43929 436 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 NPM3O75607 178 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 LMOD1P29536 600 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 EXOSC10Q01780 885 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 TCP10Q12799 353 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 NFIAQ12857 509 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 RBM26Q5T8P6 1007 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 SPRYD3Q8NCJ5 442 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 BRF1Q92994 677 aa20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 ZNF70Q9UC06 446 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-202ENST00000421922 ENTPD3O75355 529 aa20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 PRDM1O75626 825 aa20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 SPDYE2Q495Y8 402 aa20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 IQCA1Q86XH1 822 aa20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 CRACR2BQ8N4Y2 399 aaPredicted RBP20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 INCENPQ9NQS7 918 aa20.16■□□□□ 0.82
CCDC28B-202ENST00000421922 TSPY2A6NKD2 308 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 IFIT3O14879 490 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 TNNI2P48788 182 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 PLCD1P51178 756 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 TOB2Q14106 344 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 TMEM67Q5HYA8 995 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 CYB5R4Q7L1T6 521 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 ZNF444Q8N0Y2 327 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 DYNLL2Q96FJ2 89 aa20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 LARP6Q9BRS8 491 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 GPBP1L1Q9HC44 474 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC28B-202ENST00000421922 TCP10L2B9ZVM9 353 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 HSPA6P17066 643 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 ANTXR2P58335 489 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 KIF4BQ2VIQ3 1234 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 DPY19L2Q6NUT2 758 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 NFXL1Q6ZNB6 911 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 C16orf86Q6ZW13 317 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 MTA3Q9BTC8 594 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 ZSWIM5Q9P217 1185 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 FAM198AQ9UFP1 575 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 SWAP70Q9UH65 585 aa20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 ANGEL1Q9UNK9 670 aaKnown RBP20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 ZC3H4Q9UPT8 1303 aaKnown RBP20.14■□□□□ 0.81
CCDC28B-202ENST00000421922 COL2A1P02458 1487 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 SHTN1A0MZ66 631 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 WNT10BO00744 389 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 FGRP09769 529 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 TNFAIP1Q13829 316 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 COL9A3Q14050 684 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 WTAPQ15007 396 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 TBC1D10BQ4KMP7 808 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 FKBP1CQ5VVH2 108 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 FOXD4L1Q9NU39 408 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 GPRC5DQ9NZD1 345 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 SERPINB13Q9UIV8 391 aa20.13■□□□□ 0.81
CCDC28B-202ENST00000421922 SMIM22K7EJ46 135 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 CDK8P49336 464 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 EVX2Q03828 476 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 APOBRQ0VD83 1088 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 SYNE3Q6ZMZ3 975 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 FBXL16Q8N461 479 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 CHMP4CQ96CF2 233 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 SLKQ9H2G2 1235 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 PI4KBQ9UBF8 816 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 TPCN1Q9ULQ1 816 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 TACC3Q9Y6A5 838 aa20.12■□□□□ 0.81
CCDC28B-202ENST00000421922 CCDC69A6NI79 296 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 SH2B2O14492 632 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 TSPY3P0CV98 308 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 TSPY8P0CW00 308 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 NBPF9Q3BBW0 867 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 CCDC178Q5BJE1 867 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 SAMD7Q7Z3H4 446 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 ZNF526Q8TF50 670 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 ZBED3Q96IU2 234 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 ZKSCAN3Q9BRR0 538 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 AGXT2Q9BYV1 514 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 EHD4Q9H223 541 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 TAOK2Q9UL54 1235 aa20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-202ENST00000421922 KLF18A0A0U1RQI7 1052 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 STK3Q13188 491 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 FAM47AQ5JRC9 791 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 TMTC2Q8N394 836 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 SLC44A5Q8NCS7 719 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 FAM151AQ8WW52 585 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 ZSCAN10Q96SZ4 725 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 TNKSO95271 1327 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms