RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 YEATS4O95619 227 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 SYKP43405 635 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 NFIXQ14938 502 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 CEP57L1Q8IYX8 460 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 RIOK1Q9BRS2 568 aaKnown RBP12.65□□□□□ -0.38
DDX56-203ENST00000421223 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.65□□□□□ -0.38
DDX56-203ENST00000421223 MCM9Q9NXL9 1143 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 V9GY48 417 aaPredicted RBP12.65□□□□□ -0.38
DDX56-203ENST00000421223 ZNF75DP51815 510 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 DIXDC1Q155Q3 683 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 DPCR1Q3MIW9 517 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 HSP90AA4PQ58FG1 418 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 IQCA1Q86XH1 822 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 OXER1Q8TDS5 423 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 CABP5Q9NP86 173 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 ATRNO75882 1429 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 SLC39A14Q15043 492 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 RBM43Q6ZSC3 357 aaKnown RBP12.64□□□□□ -0.39
DDX56-203ENST00000421223 CNBD1Q8NA66 436 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 KCNF1Q9H3M0 494 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.64□□□□□ -0.39
DDX56-203ENST00000421223 USP5P45974 858 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 CTR9Q6PD62 1173 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 ENAHQ8N8S7 591 aaPredicted RBP12.64□□□□□ -0.39
DDX56-203ENST00000421223 NSUN4Q96CB9 384 aaKnown RBP12.64□□□□□ -0.39
DDX56-203ENST00000421223 BCL9LQ86UU0 1499 aa12.64□□□□□ -0.39
DDX56-203ENST00000421223 ANKRD36CQ5JPF3 1778 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 CNTNAP4Q9C0A0 1308 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 CCDC196A0A1B0GTZ2 297 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 PLEKHA8P1O95397 391 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 FMNL1O95466 1100 aaPredicted RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 USP17L8P0C7I0 530 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 IFNAR1P17181 557 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 ARID5BQ14865 1188 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 FBXO33Q7Z6M2 555 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 CATIPQ7Z7H3 387 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 CRACR2BQ8N4Y2 399 aaPredicted RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 ZSCAN10Q96SZ4 725 aaPredicted RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 CRNKL1Q9BZJ0 848 aaKnown RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 KIAA1468Q9P260 1216 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 MROH7-TTC4A0A0A0MT08 1334 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 UQCRHLA0A096LP55 91 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 TSPY2A6NKD2 308 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 SMC2O95347 1197 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 UQCRHP07919 91 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 AXDND1Q5T1B0 1012 aaPredicted RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 TMTC2Q8N394 836 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 JMYQ8N9B5 988 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 TDRD7Q8NHU6 1098 aaKnown RBP12.63□□□□□ -0.39
DDX56-203ENST00000421223 WASF1Q92558 559 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 ANKRD2Q9GZV1 360 aa12.63□□□□□ -0.39
DDX56-203ENST00000421223 MYH7P12883 1935 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 RTL9Q8NET4 1388 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 FAM205CA6NFA0 338 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 RRP9O43818 475 aaKnown RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 PNOCQ13519 176 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 IQCB1Q15051 598 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 NOSTRINQ8IVI9 506 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 SEPT12Q8IYM1 358 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 RPGRQ92834 1020 aaKnown RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 FAM13BQ9NYF5 915 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 SAP30BPQ9UHR5 308 aaKnown RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 COL1A1P02452 1464 aaPredicted RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 LTBP4Q8N2S1 1624 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 A0A1W2PQ27 194 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 A0A1W2PQ64 194 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 A0A1W2PQD8 194 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 GRIN1Q05586 938 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 SLC10A5Q5PT55 438 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 SHC4Q6S5L8 630 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 TSC1Q92574 1164 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 DYNLL2Q96FJ2 89 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 GJD4Q96KN9 370 aaPredicted RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 NAT10Q9H0A0 1025 aaKnown RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 LRRC4BQ9NT99 713 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 DEXIO95424 95 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 CMA1P23946 247 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 LMOD1P29536 600 aaPredicted RBP12.62□□□□□ -0.39
DDX56-203ENST00000421223 PTPN21Q16825 1174 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 CNNM3Q8NE01 707 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 PCDHB6Q9Y5E3 794 aa12.62□□□□□ -0.39
DDX56-203ENST00000421223 MMP1P03956 469 aa12.61□□□□□ -0.39
DDX56-203ENST00000421223 GRIK5Q16478 980 aa12.61□□□□□ -0.39
DDX56-203ENST00000421223 CCDC144BQ3MJ40 725 aa12.61□□□□□ -0.39
DDX56-203ENST00000421223 FNBP4Q8N3X1 1017 aaPredicted RBP12.61□□□□□ -0.39
DDX56-203ENST00000421223 DCP1AQ9NPI6 582 aaPredicted RBP12.61□□□□□ -0.39
DDX56-203ENST00000421223 FOXN1O15353 648 aa12.61□□□□□ -0.39
DDX56-203ENST00000421223 LDHBP07195 334 aaKnown RBP12.61□□□□□ -0.39
DDX56-203ENST00000421223 RC3H1Q5TC82 1133 aaKnown RBP12.61□□□□□ -0.39
DDX56-203ENST00000421223 AFF2P51816 1311 aa12.61□□□□□ -0.39
DDX56-203ENST00000421223 LONRF3Q496Y0 759 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 DHX40Q8IX18 779 aaKnown RBP12.6□□□□□ -0.39
DDX56-203ENST00000421223 MKNK2Q9HBH9 465 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 COL22A1Q8NFW1 1626 aaPredicted RBP12.6□□□□□ -0.39
DDX56-203ENST00000421223 C6orf229H3BNL8 230 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 UFL1O94874 794 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 TRIM37O94972 964 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 TM4SF1P30408 202 aa12.6□□□□□ -0.39
DDX56-203ENST00000421223 HSP90AA2PQ14568 343 aaPredicted RBP12.6□□□□□ -0.39
DDX56-203ENST00000421223 GRAMD1CQ8IYS0 662 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms