RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 HMGCS2P54868 508 aa15.96■□□□□ 0.15
LINC00339-202ENST00000416769 SPP2Q13103 211 aa15.96■□□□□ 0.15
LINC00339-202ENST00000416769 LRCH3Q96II8 777 aa15.96■□□□□ 0.15
LINC00339-202ENST00000416769 NEUROD6Q96NK8 337 aa15.96■□□□□ 0.15
LINC00339-202ENST00000416769 MYO5AQ9Y4I1 1855 aaKnown RBP15.96■□□□□ 0.15
LINC00339-202ENST00000416769 TFRCP02786 760 aaKnown RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 KCNA4P22459 653 aa15.95■□□□□ 0.14
LINC00339-202ENST00000416769 ERICH6Q7L0X2 663 aa15.95■□□□□ 0.14
LINC00339-202ENST00000416769 ZGPATQ8N5A5 531 aaKnown RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 NSUN4Q96CB9 384 aaKnown RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 PAWRQ96IZ0 340 aaKnown RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 HTATIP2Q9BUP3 242 aa15.95■□□□□ 0.14
LINC00339-202ENST00000416769 API5Q9BZZ5 524 aaKnown RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 PAK6Q9NQU5 681 aaPredicted RBP15.95■□□□□ 0.14
LINC00339-202ENST00000416769 STAP2Q9UGK3 403 aa15.95■□□□□ 0.14
LINC00339-202ENST00000416769 SLC45A1Q9Y2W3 748 aa15.95■□□□□ 0.14
LINC00339-202ENST00000416769 PDS5AQ29RF7 1337 aaKnown RBP15.94■□□□□ 0.14
LINC00339-202ENST00000416769 PNMA6EA0A0J9YXQ4 647 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 MCAMP43121 646 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 RARSP54136 660 aaKnown RBP15.94■□□□□ 0.14
LINC00339-202ENST00000416769 IRF5Q13568 498 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 SPATA5Q8NB90 893 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 SH3RF3Q8TEJ3 882 aaPredicted RBP15.94■□□□□ 0.14
LINC00339-202ENST00000416769 OSBPL5Q9H0X9 879 aaPredicted RBP15.94■□□□□ 0.14
LINC00339-202ENST00000416769 SNRKQ9NRH2 765 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 CDK5RAP2Q96SN8 1893 aa15.94■□□□□ 0.14
LINC00339-202ENST00000416769 ZBTB22O15209 634 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 MNX1P50219 401 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-202ENST00000416769 MVPQ14764 893 aaKnown RBP15.93■□□□□ 0.14
LINC00339-202ENST00000416769 ADGRA1Q86SQ6 560 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 PXYLP1Q8TE99 480 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 CRISPLD2Q9H0B8 497 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.93■□□□□ 0.14
LINC00339-202ENST00000416769 ASCC2Q9H1I8 757 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-202ENST00000416769 DNAJC18Q9H819 358 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 RAI14Q9P0K7 980 aa15.93■□□□□ 0.14
LINC00339-202ENST00000416769 COL6A3P12111 3177 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 DDX60LQ5H9U9 1706 aaKnown RBP15.92■□□□□ 0.14
LINC00339-202ENST00000416769 TBC1D12O60347 775 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 EVI5O60447 810 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 CT47B1P0C2W7 299 aaPredicted RBP15.92■□□□□ 0.14
LINC00339-202ENST00000416769 MTX1Q13505 466 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 FAM110CQ1W6H9 321 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 SPTY2D1Q68D10 685 aaPredicted RBP15.92■□□□□ 0.14
LINC00339-202ENST00000416769 ZNF280CQ8ND82 737 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 GJD2Q9UKL4 321 aa15.92■□□□□ 0.14
LINC00339-202ENST00000416769 ZMYND8Q9ULU4 1186 aaPredicted RBP15.92■□□□□ 0.14
LINC00339-202ENST00000416769 ARID4AP29374 1257 aaPredicted RBP15.91■□□□□ 0.14
LINC00339-202ENST00000416769 CAP2P40123 477 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 MTMR2Q13614 643 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 POTEEQ6S8J3 1075 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 TEX11Q8IYF3 940 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 C7orf61Q8IZ16 206 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 TRIB2Q92519 343 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 COA7Q96BR5 231 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 TXNRD2Q9NNW7 524 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 NR2E3Q9Y5X4 410 aa15.91■□□□□ 0.14
LINC00339-202ENST00000416769 GDF11O95390 407 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 TRIM27P14373 513 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 MAPKAPK5Q8IW41 473 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 SLF2Q8IX21 1173 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 PROCA1Q8NCQ7 364 aaPredicted RBP15.9■□□□□ 0.14
LINC00339-202ENST00000416769 CLUAP1Q96AJ1 413 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 AATFQ9NY61 560 aaKnown RBP eCLIP15.9■□□□□ 0.14
LINC00339-202ENST00000416769 AKAP2Q9Y2D5 859 aa15.9■□□□□ 0.14
LINC00339-202ENST00000416769 COL2A1P02458 1487 aaPredicted RBP15.9■□□□□ 0.14
LINC00339-202ENST00000416769 NPM3O75607 178 aaKnown RBP15.89■□□□□ 0.13
LINC00339-202ENST00000416769 BCAR3O75815 825 aa15.89■□□□□ 0.13
LINC00339-202ENST00000416769 SYN1P17600 705 aa15.89■□□□□ 0.13
LINC00339-202ENST00000416769 CYP2B6P20813 491 aa15.89■□□□□ 0.13
LINC00339-202ENST00000416769 MAST2Q6P0Q8 1798 aa15.89■□□□□ 0.13
LINC00339-202ENST00000416769 HMGCRP04035 888 aa15.88■□□□□ 0.13
LINC00339-202ENST00000416769 GORABQ5T7V8 394 aa15.88■□□□□ 0.13
LINC00339-202ENST00000416769 P2RX7Q99572 595 aaKnown RBP15.88■□□□□ 0.13
LINC00339-202ENST00000416769 DBNDD2Q9BQY9 259 aa15.88■□□□□ 0.13
LINC00339-202ENST00000416769 SAP30BPQ9UHR5 308 aaKnown RBP15.88■□□□□ 0.13
LINC00339-202ENST00000416769 PNMA3Q9UL41 463 aa15.88■□□□□ 0.13
LINC00339-202ENST00000416769 FOCADQ5VW36 1801 aa15.88■□□□□ 0.13
LINC00339-202ENST00000416769 USP17L5A8MUK1 530 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 GNAI3P08754 354 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 DYNLL1P63167 89 aaKnown RBP15.87■□□□□ 0.13
LINC00339-202ENST00000416769 SH3D19Q5HYK7 790 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 TGFBRAP1Q8WUH2 860 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 C1orf115Q9H7X2 142 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 PIH1D3Q9NQM4 214 aaKnown RBP15.87■□□□□ 0.13
LINC00339-202ENST00000416769 TLR7Q9NYK1 1049 aaKnown RBP15.87■□□□□ 0.13
LINC00339-202ENST00000416769 LRP2BPQ9P2M1 347 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 PALD1Q9ULE6 856 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 FLT1P17948 1338 aa15.87■□□□□ 0.13
LINC00339-202ENST00000416769 LDHCP07864 332 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 GCLCP48506 637 aaPredicted RBP15.86■□□□□ 0.13
LINC00339-202ENST00000416769 GSTO1P78417 241 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 CCL14Q16627 93 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 Q3C1V9 767 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 NECAB2Q7Z6G3 386 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 FRAT1Q92837 279 aaPredicted RBP15.86■□□□□ 0.13
LINC00339-202ENST00000416769 PORCNQ9H237 461 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 NDUFB9Q9Y6M9 179 aa15.86■□□□□ 0.13
LINC00339-202ENST00000416769 PFASO15067 1338 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms