RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 SPC25Q9HBM1 224 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 PODXL2Q9NZ53 605 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 RNF181Q9P0P0 153 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 TYRO3Q06418 890 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 CTR9Q6PD62 1173 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 RNF17Q9BXT8 1623 aaKnown RBP17.63■□□□□ 0.41
PHRF1-203ENST00000416188 GRAPQ13588 217 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 KRT79Q5XKE5 535 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 GRAPLQ8TC17 118 aaPredicted RBP17.63■□□□□ 0.41
PHRF1-203ENST00000416188 PDE8BO95263 885 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 FERMT2Q96AC1 680 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 KIFC2Q96AC6 838 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 KRT2P35908 639 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 TFAP4Q01664 338 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 MAATS1Q7Z4T9 603 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 EHBP1Q8NDI1 1231 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 ARHGEF1Q92888 912 aaKnown RBP17.62■□□□□ 0.41
PHRF1-203ENST00000416188 USP26Q9BXU7 913 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 CYLC1P35663 651 aaPredicted RBP17.62■□□□□ 0.41
PHRF1-203ENST00000416188 CTDSPL2Q05D32 466 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 ARPP21Q9UBL0 812 aaPredicted RBP17.62■□□□□ 0.41
PHRF1-203ENST00000416188 IQGAP3Q86VI3 1631 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 SMC1AQ14683 1233 aaKnown RBP17.62■□□□□ 0.41
PHRF1-203ENST00000416188 RUFY3Q7L099 469 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 PRIMPOLQ96LW4 560 aa17.62■□□□□ 0.41
PHRF1-203ENST00000416188 GTF2F1P35269 517 aaKnown RBP eCLIP17.61■□□□□ 0.41
PHRF1-203ENST00000416188 IBTKQ9P2D0 1353 aaPredicted RBP17.61■□□□□ 0.41
PHRF1-203ENST00000416188 SYT1P21579 422 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 SUSD4Q5VX71 490 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 OTUD7AQ8TE49 926 aaPredicted RBP17.61■□□□□ 0.41
PHRF1-203ENST00000416188 STX17P56962 302 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 RNF187Q5TA31 235 aaPredicted RBP17.61■□□□□ 0.41
PHRF1-203ENST00000416188 FNBP4Q8N3X1 1017 aaPredicted RBP17.61■□□□□ 0.41
PHRF1-203ENST00000416188 TRERF1Q96PN7 1200 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 USP17L12C9JPN9 530 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 USP17L21D6R901 530 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 USH1GQ495M9 461 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 TMEM87BQ96K49 555 aa17.61■□□□□ 0.41
PHRF1-203ENST00000416188 CERKLQ49MI3 558 aaPredicted RBP17.6■□□□□ 0.41
PHRF1-203ENST00000416188 CHURC1Q8WUH1 139 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 CNGA1P29973 690 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 PHACTR2O75167 634 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 PUS3Q9BZE2 481 aaKnown RBP17.6■□□□□ 0.41
PHRF1-203ENST00000416188 ARHGEF40Q8TER5 1519 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 CLTCL1P53675 1640 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 USP37Q86T82 979 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 CCDC97Q96F63 343 aaPredicted RBP17.6■□□□□ 0.41
PHRF1-203ENST00000416188 PLEKHF1Q96S99 279 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 GINS2Q9Y248 185 aa17.6■□□□□ 0.41
PHRF1-203ENST00000416188 BMS1Q14692 1282 aaKnown RBP17.59■□□□□ 0.41
PHRF1-203ENST00000416188 DYNC1I1O14576 645 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 NAP1L4Q99733 375 aaKnown RBP17.59■□□□□ 0.41
PHRF1-203ENST00000416188 CPSF1Q10570 1443 aaKnown RBP17.59■□□□□ 0.41
PHRF1-203ENST00000416188 RIMS1Q86UR5 1692 aaKnown RBP17.59■□□□□ 0.41
PHRF1-203ENST00000416188 SPATA31A1Q5TZJ5 1347 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 INTS4Q96HW7 963 aaKnown RBP17.59■□□□□ 0.41
PHRF1-203ENST00000416188 AGLP35573 1532 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 TULP4Q9NRJ4 1543 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 CFBP00751 764 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 CCDC172P0C7W6 258 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 TTC16Q8NEE8 873 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 FAM227BQ96M60 508 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 COL15A1P39059 1388 aa17.59■□□□□ 0.41
PHRF1-203ENST00000416188 CCDC175P0C221 793 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 ATP5JP18859 108 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 IFI16Q16666 785 aaKnown RBP17.58■□□□□ 0.41
PHRF1-203ENST00000416188 KIAA0753Q2KHM9 967 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 FAM47AQ5JRC9 791 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 CSRNP1Q96S65 589 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 DIP2BQ9P265 1576 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 MCM7P33993 719 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 ARID5AQ03989 594 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 TBC1D5Q92609 795 aa17.58■□□□□ 0.41
PHRF1-203ENST00000416188 USP17L3A6NCW0 530 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 USP17L4A6NCW7 530 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 PHKA1P46020 1223 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 USP17L1Q7RTZ2 530 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 KRT13P13646 458 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 GLT8D2Q9H1C3 349 aa17.58■□□□□ 0.4
PHRF1-203ENST00000416188 LETM2Q2VYF4 491 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 FAM13AO94988 1023 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 LMAN1P49257 510 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 FAM212AQ96EL1 285 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 FAM107BQ9H098 131 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 ZKSCAN5Q9Y2L8 839 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 CTAGE15A4D2H0 777 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 CTAGE8P0CG41 777 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 PPM1FP49593 454 aaPredicted RBP17.57■□□□□ 0.4
PHRF1-203ENST00000416188 CTAGE6Q86UF2 777 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 CTAGE4Q8IX94 777 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 SEMA3EO15041 775 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 CHMP2AO43633 222 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 PLIN2Q99541 437 aa17.57■□□□□ 0.4
PHRF1-203ENST00000416188 FSD2A1L4K1 749 aa17.56■□□□□ 0.4
PHRF1-203ENST00000416188 INCENPQ9NQS7 918 aa17.56■□□□□ 0.4
PHRF1-203ENST00000416188 CDK12Q9NYV4 1490 aaPredicted RBP17.56■□□□□ 0.4
PHRF1-203ENST00000416188 ICA1Q05084 483 aa17.56■□□□□ 0.4
PHRF1-203ENST00000416188 AZI2Q9H6S1 392 aa17.56■□□□□ 0.4
PHRF1-203ENST00000416188 PDE6AP16499 860 aa17.56■□□□□ 0.4
PHRF1-203ENST00000416188 PPARAQ07869 468 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms