RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 RPS12P25398 132 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 RBM5P52756 815 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS41-204ENST00000413141 FGD1P98174 961 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 NFIAQ12857 509 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 TNIP1Q15025 636 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 RRP12Q5JTH9 1297 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 STK11IPQ8N1F8 1099 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 ESR2Q92731 530 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 INTS4Q96HW7 963 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 IDI2Q9BXS1 227 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 OSBPL5Q9H0X9 879 aaPredicted RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 GPHNQ9NQX3 736 aaPredicted RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 TOMM22Q9NS69 142 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 SAP30BPQ9UHR5 308 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 HDAC9Q9UKV0 1011 aa7.84□□□□□ -1.15
VPS41-204ENST00000413141 ANGEL1Q9UNK9 670 aaKnown RBP7.84□□□□□ -1.15
VPS41-204ENST00000413141 PRDM1O75626 825 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 POLR3DP05423 398 aaPredicted RBP7.83□□□□□ -1.16
VPS41-204ENST00000413141 LMNB1P20700 586 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 NT5C2P49902 561 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 PLCD1P51178 756 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 CACNB3P54284 484 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 EIF6P56537 245 aaKnown RBP7.83□□□□□ -1.16
VPS41-204ENST00000413141 EVCP57679 992 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 PDE4BQ07343 736 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 APOBRQ0VD83 1088 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 ARHGAP27Q6ZUM4 889 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 C16orf86Q6ZW13 317 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 CCDC83Q8IWF9 413 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 OGFOD1Q8N543 542 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 MTMR14Q8NCE2 650 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 GTF3C6Q969F1 213 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 DYNLL2Q96FJ2 89 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 TMEM87BQ96K49 555 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 MTA3Q9BTC8 594 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 LY9Q9HBG7 655 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 ZSWIM5Q9P217 1185 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 CIZ1Q9ULV3 898 aaPredicted RBP7.83□□□□□ -1.16
VPS41-204ENST00000413141 NID2Q14112 1375 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 ATRNL1Q5VV63 1379 aa7.83□□□□□ -1.16
VPS41-204ENST00000413141 TNKSO95271 1327 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 KLF18A0A0U1RQI7 1052 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 GOLGA8BA8MQT2 603 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 RANBP6O60518 1105 aaKnown RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 PFKFB2O60825 505 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 GMPSP49915 693 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 MMP14P50281 582 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 ZNF280AP59817 542 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 SCRN1Q12765 414 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 STK3Q13188 491 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 SART3Q15020 963 aaKnown RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 DLGAP5Q15398 846 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 SPDYE2Q495Y8 402 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 TMEM67Q5HYA8 995 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 SGMS1Q86VZ5 419 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 NECAB1Q8N987 351 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 SLC44A5Q8NCS7 719 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 IGDCC4Q8TDY8 1250 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 ZNF274Q96GC6 653 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 ZBED3Q96IU2 234 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 PRMT6Q96LA8 375 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 ZKSCAN3Q9BRR0 538 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 UBAC1Q9BSL1 405 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 TDRD3Q9H7E2 651 aaKnown RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 SENP2Q9HC62 589 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 CWC22Q9HCG8 908 aaKnown RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 MYOZ2Q9NPC6 264 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 CHMP5Q9NZZ3 219 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 FAM198AQ9UFP1 575 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 BRPF3Q9ULD4 1205 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 PLIN4Q96Q06 1357 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 MYH8P13535 1937 aa7.82□□□□□ -1.16
VPS41-204ENST00000413141 GREB1LQ9C091 1923 aaPredicted RBP7.82□□□□□ -1.16
VPS41-204ENST00000413141 SHTN1A0MZ66 631 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 ERICH2A1L162 156 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 IFIT3O14879 490 aaKnown RBP7.81□□□□□ -1.16
VPS41-204ENST00000413141 ENTPD3O75355 529 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 HLA-DOAP06340 250 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 RASA1P20936 1047 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 PDIA3P30101 505 aaKnown RBP7.81□□□□□ -1.16
VPS41-204ENST00000413141 LIFRP42702 1097 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 CDK8P49336 464 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 GABPAQ06546 454 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 WTAPQ15007 396 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 SEC23AQ15436 765 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 FAM47AQ5JRC9 791 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 APOA5Q6Q788 366 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 TTC6Q86TZ1 520 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 IQCA1Q86XH1 822 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 MICALL2Q8IY33 904 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 ENAHQ8N8S7 591 aaPredicted RBP7.81□□□□□ -1.16
VPS41-204ENST00000413141 DPF2Q92785 391 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 ZSCAN10Q96SZ4 725 aaPredicted RBP7.81□□□□□ -1.16
VPS41-204ENST00000413141 EHD4Q9H223 541 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 ZNF287Q9HBT7 754 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 TMOD2Q9NZR1 351 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 ZNF70Q9UC06 446 aaPredicted RBP7.81□□□□□ -1.16
VPS41-204ENST00000413141 SERPINB13Q9UIV8 391 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 HPS5Q9UPZ3 1129 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms