RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 USP5P45974 858 aa28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 MAP3K11Q16584 847 aa28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 TRIM22Q8IYM9 498 aa28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 FANCBQ8NB91 859 aa28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 TRIM44Q96DX7 344 aaPredicted RBP28.67■■■□□ 2.18
DNMT3A-206ENST00000406659 GRIK5Q16478 980 aa28.66■■■□□ 2.18
DNMT3A-206ENST00000406659 ENAHQ8N8S7 591 aaPredicted RBP28.66■■■□□ 2.18
DNMT3A-206ENST00000406659 MCM9Q9NXL9 1143 aa28.66■■■□□ 2.18
DNMT3A-206ENST00000406659 PARP3Q9Y6F1 533 aa28.66■■■□□ 2.18
DNMT3A-206ENST00000406659 MYH2Q9UKX2 1941 aa28.66■■■□□ 2.18
DNMT3A-206ENST00000406659 CYP2D6P10635 497 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 PDE4BQ07343 736 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 PPP2R5BQ15173 497 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 DIXDC1Q155Q3 683 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 IFIT1BQ5T764 474 aaKnown RBP28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 MYSM1Q5VVJ2 828 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 TNMDQ9H2S6 317 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 KIF28PB7ZC32 967 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 NPR1P16066 1061 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 ME1P48163 572 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 PPP4CP60510 307 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 GNL2Q13823 731 aaKnown RBP28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 CAMK4Q16566 473 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 SH3RF3Q8TEJ3 882 aaPredicted RBP28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 CLSTN2Q9H4D0 955 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 TAOK2Q9UL54 1235 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 ATP6V0A2Q9Y487 856 aa28.65■■■□□ 2.18
DNMT3A-206ENST00000406659 NR1I2O75469 434 aa28.64■■■□□ 2.18
DNMT3A-206ENST00000406659 CATIPQ7Z7H3 387 aa28.64■■■□□ 2.18
DNMT3A-206ENST00000406659 CCAR1Q8IX12 1150 aaKnown RBP28.64■■■□□ 2.18
DNMT3A-206ENST00000406659 FUCA2Q9BTY2 467 aa28.64■■■□□ 2.18
DNMT3A-206ENST00000406659 MROH7-TTC4A0A0A0MT08 1334 aa28.64■■■□□ 2.17
DNMT3A-206ENST00000406659 LAMB1P07942 1786 aa28.64■■■□□ 2.17
DNMT3A-206ENST00000406659 SRGNP10124 158 aa28.63■■■□□ 2.17
DNMT3A-206ENST00000406659 PDE6BP35913 854 aa28.63■■■□□ 2.17
DNMT3A-206ENST00000406659 STK38Q15208 465 aa28.63■■■□□ 2.17
DNMT3A-206ENST00000406659 UVSSAQ2YD98 709 aa28.63■■■□□ 2.17
DNMT3A-206ENST00000406659 ANKRD31Q8N7Z5 1873 aa28.63■■■□□ 2.17
DNMT3A-206ENST00000406659 MMP10P09238 476 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 USP17L8P0C7I0 530 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 CCDC192P0DO97 292 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 CERS3Q8IU89 383 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 CRACR2BQ8N4Y2 399 aaPredicted RBP28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 POLR3EQ9NVU0 708 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 CLIC4Q9Y696 253 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 YEATS4O95619 227 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 EVX2Q03828 476 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 SF3A1Q15459 793 aaKnown RBP28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 AMOTL1Q8IY63 956 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 TBC1D22AQ8WUA7 517 aa28.62■■■□□ 2.17
DNMT3A-206ENST00000406659 LRRC37AA6NMS7 1700 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 NRXN2Q9P2S2 1712 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 ALDH1B1P30837 517 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 CCDC73Q6ZRK6 1079 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 FAM43AQ8N2R8 423 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 LINC00301Q8NCQ3 95 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 KCNG4Q8TDN1 519 aa28.61■■■□□ 2.17
DNMT3A-206ENST00000406659 ECM29Q5VYK3 1845 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 DEXIO95424 95 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 CALM1P0DP23 149 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 CALM2P0DP24 149 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 CALM3P0DP25 149 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 C12orf60Q5U649 245 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 NBPF11Q86T75 865 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 SLF2Q8IX21 1173 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 CCDC82Q8N4S0 544 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 MKRN1Q9UHC7 482 aaKnown RBP28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 MFSD14BQ5SR56 506 aa28.6■■■□□ 2.17
DNMT3A-206ENST00000406659 FAM47AQ5JRC9 791 aa28.59■■■□□ 2.17
DNMT3A-206ENST00000406659 ANO1Q5XXA6 986 aa28.59■■■□□ 2.17
DNMT3A-206ENST00000406659 RTFDC1Q9BY42 306 aaPredicted RBP28.59■■■□□ 2.17
DNMT3A-206ENST00000406659 RTN4Q9NQC3 1192 aaKnown RBP28.59■■■□□ 2.17
DNMT3A-206ENST00000406659 PCDHA7Q9UN72 937 aa28.59■■■□□ 2.17
DNMT3A-206ENST00000406659 UBE2Q2LH0YL09 131 aa28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 SAFBQ15424 915 aaKnown RBP eCLIP28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 CMTR1Q8N1G2 835 aaKnown RBP28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 TGFBRAP1Q8WUH2 860 aa28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 TMX4Q9H1E5 349 aaPredicted RBP28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 RBM28Q9NW13 759 aaKnown RBP28.58■■■□□ 2.17
DNMT3A-206ENST00000406659 TSPY2A6NKD2 308 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 RIMBP2O15034 1052 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 SPTLC2O15270 562 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 DDAH1O94760 285 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 U2AF2P26368 475 aaKnown RBP eCLIP28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 GUCY1A2P33402 732 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 BTDP43251 543 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 AKAP17AQ02040 695 aaKnown RBP28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 SLC4A8Q2Y0W8 1093 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 ADALQ6DHV7 355 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 FAM205AQ6ZU69 1335 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 CKAP2LQ8IYA6 745 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 MPNDQ8N594 471 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 FSIP1Q8NA03 581 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 PDLIM2Q96JY6 352 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 COA1Q9GZY4 146 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 PLCG2P16885 1265 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 NT5C2P49902 561 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 MSL1Q68DK7 614 aa28.57■■■□□ 2.16
DNMT3A-206ENST00000406659 RBM43Q6ZSC3 357 aaKnown RBP28.57■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms