RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 TNKSO95271 1327 aa30.02■■■□□ 2.4
CPNE1-205ENST00000401607 FLT1P17948 1338 aa30.02■■■□□ 2.4
CPNE1-205ENST00000401607 RANBP6O60518 1105 aaKnown RBP30.02■■■□□ 2.4
CPNE1-205ENST00000401607 MYL10Q9BUA6 226 aa30.02■■■□□ 2.4
CPNE1-205ENST00000401607 SLC12A7Q9Y666 1083 aa30.02■■■□□ 2.4
CPNE1-205ENST00000401607 R3HDM1Q15032 1099 aaKnown RBP30.01■■■□□ 2.39
CPNE1-205ENST00000401607 ATP6V1DQ9Y5K8 247 aa30.01■■■□□ 2.39
CPNE1-205ENST00000401607 PRPF40AO75400 957 aaKnown RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 POLD1P28340 1107 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 CDC27P30260 824 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 PDE4BQ07343 736 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 SKOR2Q2VWA4 1001 aaPredicted RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 RTKN2Q8IZC4 609 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 TMTC2Q8N394 836 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 ZSCAN10Q96SZ4 725 aaPredicted RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 FAM217BQ9NTX9 383 aaPredicted RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 KIF3AQ9Y496 699 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 GOLGA8AA7E2F4 631 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 CPLX1O14810 134 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 PPIP5K2O43314 1243 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 ADD1P35611 737 aaKnown RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 SCNN1DP51172 638 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 TGFB2P61812 414 aa30■■■□□ 2.39
CPNE1-205ENST00000401607 SAP30BPQ9UHR5 308 aaKnown RBP30■■■□□ 2.39
CPNE1-205ENST00000401607 HHIPL2Q6UWX4 724 aa29.99■■■□□ 2.39
CPNE1-205ENST00000401607 AMOTL1Q8IY63 956 aa29.99■■■□□ 2.39
CPNE1-205ENST00000401607 ENAHQ8N8S7 591 aaPredicted RBP29.99■■■□□ 2.39
CPNE1-205ENST00000401607 DYNLL2Q96FJ2 89 aa29.99■■■□□ 2.39
CPNE1-205ENST00000401607 PSMD1Q99460 953 aa29.99■■■□□ 2.39
CPNE1-205ENST00000401607 USP17L3A6NCW0 530 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 USP17L4A6NCW7 530 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 PLCD1P51178 756 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 USP17L1Q7RTZ2 530 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 FERMT3Q86UX7 667 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 CCDC144CPQ8IYA2 1237 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 UPF1Q92900 1129 aaKnown RBP eCLIP29.98■■■□□ 2.39
CPNE1-205ENST00000401607 IQCA1Q86XH1 822 aa29.98■■■□□ 2.39
CPNE1-205ENST00000401607 YDJCA8MPS7 323 aa29.97■■■□□ 2.39
CPNE1-205ENST00000401607 POLR3DP05423 398 aaPredicted RBP29.97■■■□□ 2.39
CPNE1-205ENST00000401607 SYNE3Q6ZMZ3 975 aa29.97■■■□□ 2.39
CPNE1-205ENST00000401607 TEKT1Q969V4 418 aa29.97■■■□□ 2.39
CPNE1-205ENST00000401607 CNPY2Q9Y2B0 182 aa29.97■■■□□ 2.39
CPNE1-205ENST00000401607 TCHHQ07283 1943 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 H3BQV1 296 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 RCAN1P53805 252 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 NTRK3Q16288 839 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 FAM47AQ5JRC9 791 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 IFFO2Q5TF58 517 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 ZNF654Q8IZM8 581 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 GDPD2Q9HCC8 539 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 ORC3Q9UBD5 711 aaPredicted RBP29.96■■■□□ 2.39
CPNE1-205ENST00000401607 MYH1P12882 1939 aa29.96■■■□□ 2.39
CPNE1-205ENST00000401607 GSE1Q14687 1217 aa29.95■■■□□ 2.39
CPNE1-205ENST00000401607 APOBEC3HQ6NTF7 200 aaKnown RBP29.95■■■□□ 2.39
CPNE1-205ENST00000401607 KIAA0825Q8IV33 1275 aa29.95■■■□□ 2.39
CPNE1-205ENST00000401607 CRKP46108 304 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 FOSBP53539 338 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 DNM1Q05193 864 aaKnown RBP29.95■■■□□ 2.38
CPNE1-205ENST00000401607 RESTQ13127 1097 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 KLHL40Q2TBA0 621 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 TMEM87AQ8NBN3 555 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 SGIP1Q9BQI5 828 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 PIM2Q9P1W9 311 aa29.95■■■□□ 2.38
CPNE1-205ENST00000401607 PSME4Q14997 1843 aa29.94■■■□□ 2.38
CPNE1-205ENST00000401607 WDHD1O75717 1129 aaPredicted RBP29.94■■■□□ 2.38
CPNE1-205ENST00000401607 NT5C2P49902 561 aa29.94■■■□□ 2.38
CPNE1-205ENST00000401607 MRIQ9BWK5 157 aa29.94■■■□□ 2.38
CPNE1-205ENST00000401607 DDX49Q9Y6V7 483 aaKnown RBP29.94■■■□□ 2.38
CPNE1-205ENST00000401607 BRCA1P38398 1863 aaKnown RBP29.94■■■□□ 2.38
CPNE1-205ENST00000401607 COL4A5P29400 1685 aa29.94■■■□□ 2.38
CPNE1-205ENST00000401607 CDKL5O76039 1030 aa29.93■■■□□ 2.38
CPNE1-205ENST00000401607 IFIT1BQ5T764 474 aaKnown RBP29.93■■■□□ 2.38
CPNE1-205ENST00000401607 SLC44A5Q8NCS7 719 aa29.93■■■□□ 2.38
CPNE1-205ENST00000401607 TSPY2A6NKD2 308 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 NMT2O60551 498 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 CDC42EP5Q6NZY7 148 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 CPLX2Q6PUV4 134 aaKnown RBP29.92■■■□□ 2.38
CPNE1-205ENST00000401607 ZDHHC15Q96MV8 337 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 USP40Q9NVE5 1235 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 HDLBPQ00341 1268 aaKnown RBP29.92■■■□□ 2.38
CPNE1-205ENST00000401607 RTN1Q16799 776 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 FAM173BQ6P4H8 233 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 USP48Q86UV5 1035 aa29.92■■■□□ 2.38
CPNE1-205ENST00000401607 DDX4Q9NQI0 724 aaKnown RBP29.92■■■□□ 2.38
CPNE1-205ENST00000401607 ZNF277Q9NRM2 450 aaPredicted RBP29.92■■■□□ 2.38
CPNE1-205ENST00000401607 ECM29Q5VYK3 1845 aa29.91■■■□□ 2.38
CPNE1-205ENST00000401607 SOGA3Q5TF21 947 aa29.91■■■□□ 2.38
CPNE1-205ENST00000401607 C16orf86Q6ZW13 317 aa29.91■■■□□ 2.38
CPNE1-205ENST00000401607 GPT2Q8TD30 523 aa29.91■■■□□ 2.38
CPNE1-205ENST00000401607 GZF1Q9H116 711 aaPredicted RBP29.91■■■□□ 2.38
CPNE1-205ENST00000401607 TFAP4Q01664 338 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 PICALMQ13492 652 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 PHKBQ93100 1093 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 MKNK2Q9HBH9 465 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 FANCBQ8NB91 859 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 NUP133Q8WUM0 1156 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 ZSCAN16Q9H4T2 348 aaPredicted RBP29.9■■■□□ 2.38
CPNE1-205ENST00000401607 PCDHAC2Q9Y5I4 1007 aa29.9■■■□□ 2.38
CPNE1-205ENST00000401607 IFNAR1P17181 557 aa29.89■■■□□ 2.38
CPNE1-205ENST00000401607 GUCY1B3Q02153 619 aa29.89■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms