RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TM6SF1Q9BZW5 370 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 KRT23Q9C075 422 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 TDRD3Q9H7E2 651 aaKnown RBP16.82■□□□□ 0.28
SKA1-202ENST00000398452 VEZTQ9HBM0 779 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 E7EWF7 191 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 FOXP2O15409 715 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 NEK4P51957 841 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 ZNF280AP59817 542 aaPredicted RBP16.81■□□□□ 0.28
SKA1-202ENST00000398452 TNFAIP1Q13829 316 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 KIF4BQ2VIQ3 1234 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 SBK1Q52WX2 424 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 CTR9Q6PD62 1173 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 HSCBQ8IWL3 235 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 RASEFQ8IZ41 740 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 JMYQ8N9B5 988 aa16.81■□□□□ 0.28
SKA1-202ENST00000398452 PRMT6Q96LA8 375 aaPredicted RBP16.81■□□□□ 0.28
SKA1-202ENST00000398452 SAP30BPQ9UHR5 308 aaKnown RBP16.81■□□□□ 0.28
SKA1-202ENST00000398452 AKNAD1Q5T1N1 836 aa16.8■□□□□ 0.28
SKA1-202ENST00000398452 IDI2Q9BXS1 227 aa16.8■□□□□ 0.28
SKA1-202ENST00000398452 DHX36Q9H2U1 1008 aaKnown RBP16.8■□□□□ 0.28
SKA1-202ENST00000398452 GPRC5DQ9NZD1 345 aa16.8■□□□□ 0.28
SKA1-202ENST00000398452 CLRN2A0PK11 232 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 ENTPD3O75355 529 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 WDHD1O75717 1129 aaPredicted RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 MCM2P49736 904 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 NT5C2P49902 561 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 CTDSPL2Q05D32 466 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 TBC1D10BQ4KMP7 808 aaPredicted RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 RRP12Q5JTH9 1297 aaKnown RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 MAP1SQ66K74 1059 aaPredicted RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 STAG1Q8WVM7 1258 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 OSBPL5Q9H0X9 879 aaPredicted RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 MKNK2Q9HBH9 465 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 ZNF70Q9UC06 446 aaPredicted RBP16.79■□□□□ 0.28
SKA1-202ENST00000398452 ANAPC4Q9UJX5 808 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 SCN4AP35499 1836 aa16.79■□□□□ 0.28
SKA1-202ENST00000398452 WNT10BO00744 389 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 TCP10Q12799 353 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 ANKRD1Q15327 319 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 C12orf60Q5U649 245 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 RUFY3Q7L099 469 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 STK11IPQ8N1F8 1099 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 CRACR2BQ8N4Y2 399 aaPredicted RBP16.78■□□□□ 0.28
SKA1-202ENST00000398452 ESR2Q92731 530 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 IL17RAQ96F46 866 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 UPF3BQ9BZI7 483 aaKnown RBP16.78■□□□□ 0.28
SKA1-202ENST00000398452 ZSWIM6Q9HCJ5 1215 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 PDRG1Q9NUG6 133 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 PCDHAC2Q9Y5I4 1007 aa16.78■□□□□ 0.28
SKA1-202ENST00000398452 ERICH2A1L162 156 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 TCP10L2B9ZVM9 353 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 HSPA1AP0DMV8 641 aaKnown RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 HSPA1BP0DMV9 641 aaKnown RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 MCM5P33992 734 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 EPS15P42566 896 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 CACNB3P54284 484 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 SART3Q15020 963 aaKnown RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 SLC4A8Q2Y0W8 1093 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 ADCK5Q3MIX3 580 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 COL13A1Q5TAT6 717 aaPredicted RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 FKBP1CQ5VVH2 108 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 DHX32Q7L7V1 743 aaKnown RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 SAMD7Q7Z3H4 446 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 KIF2CQ99661 725 aa16.77■□□□□ 0.28
SKA1-202ENST00000398452 ADARB2Q9NS39 739 aaKnown RBP16.77■□□□□ 0.28
SKA1-202ENST00000398452 ZNF646O15015 1829 aaPredicted RBP16.76■□□□□ 0.27
SKA1-202ENST00000398452 RPS6KB1P23443 525 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 NFIAQ12857 509 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 NBPF9Q3BBW0 867 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 PNMA8AQ86V59 439 aaPredicted RBP16.76■□□□□ 0.27
SKA1-202ENST00000398452 APOBEC3FQ8IUX4 373 aaKnown RBP16.76■□□□□ 0.27
SKA1-202ENST00000398452 TBC1D10CQ8IV04 446 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 ZNF444Q8N0Y2 327 aaPredicted RBP16.76■□□□□ 0.27
SKA1-202ENST00000398452 SWAP70Q9UH65 585 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 TAOK2Q9UL54 1235 aa16.76■□□□□ 0.27
SKA1-202ENST00000398452 CYP2D7A0A087X1C5 515 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 SHTN1A0MZ66 631 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 RANBP6O60518 1105 aaKnown RBP16.75■□□□□ 0.27
SKA1-202ENST00000398452 ITGBL1O95965 494 aaPredicted RBP16.75■□□□□ 0.27
SKA1-202ENST00000398452 CYP2D6P10635 497 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 FAM83AQ86UY5 434 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 FAM151AQ8WW52 585 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 ZBED3Q96IU2 234 aaPredicted RBP16.75■□□□□ 0.27
SKA1-202ENST00000398452 DDX4Q9NQI0 724 aaKnown RBP16.75■□□□□ 0.27
SKA1-202ENST00000398452 PI4KBQ9UBF8 816 aa16.75■□□□□ 0.27
SKA1-202ENST00000398452 PASKQ96RG2 1323 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 NAV1Q8NEY1 1877 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 TMEM88BA6NKF7 163 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 B4E1Z4 1266 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 HSP90AA1P07900 732 aaKnown RBP16.74■□□□□ 0.27
SKA1-202ENST00000398452 FMR1Q06787 632 aaKnown RBP eCLIP16.74■□□□□ 0.27
SKA1-202ENST00000398452 STOX1Q6ZVD7 989 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 IQCA1Q86XH1 822 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 FOXP4Q8IVH2 680 aaPredicted RBP16.74■□□□□ 0.27
SKA1-202ENST00000398452 SNX21Q969T3 373 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 UBAC1Q9BSL1 405 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 SERPINB13Q9UIV8 391 aa16.74■□□□□ 0.27
SKA1-202ENST00000398452 TSPY2A6NKD2 308 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 PRC1O43663 620 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 ORC4O43929 436 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms