RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 EXOSC9Q06265 439 aaKnown RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 NFIAQ12857 509 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 PDE3AQ14432 1141 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 CCDC84Q86UT8 332 aaPredicted RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 ALYREFQ86V81 257 aaKnown RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 VGLL2Q8N8G2 317 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 SOCS4Q8WXH5 440 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 SUCLG2Q96I99 432 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 RNPC3Q96LT9 517 aaKnown RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 GAS2L1Q99501 681 aaPredicted RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 LRRFIP2Q9Y608 721 aaKnown RBP11.84□□□□□ -0.51
NEDD9-203ENST00000397378 MYH2Q9UKX2 1941 aa11.84□□□□□ -0.51
NEDD9-203ENST00000397378 PHF20L1A8MW92 1017 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 PDE8BO95263 885 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 DNAJB2P25686 324 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 RABL6Q3YEC7 729 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-203ENST00000397378 METTL24Q5JXM2 366 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 WDR63Q8IWG1 891 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 TRMT44Q8IYL2 757 aaKnown RBP11.83□□□□□ -0.52
NEDD9-203ENST00000397378 NECAB3Q96P71 396 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-203ENST00000397378 SRCIN1Q9C0H9 1055 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-203ENST00000397378 UTYO14607 1347 aa11.83□□□□□ -0.52
NEDD9-203ENST00000397378 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 XRCC5P13010 732 aaKnown RBP11.82□□□□□ -0.52
NEDD9-203ENST00000397378 PABPC4Q13310 644 aaKnown RBP eCLIP11.82□□□□□ -0.52
NEDD9-203ENST00000397378 LRRC24Q50LG9 513 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 CDC42EP5Q6NZY7 148 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 POTEEQ6S8J3 1075 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 LRFN3Q9BTN0 628 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 ZNF576Q9H609 170 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 FAM198AQ9UFP1 575 aa11.82□□□□□ -0.52
NEDD9-203ENST00000397378 TCF20Q9UGU0 1960 aaKnown RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 NBPF7P0C2Y1 421 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 FGFR2P21802 821 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 CCDC85BQ15834 202 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 CCL14Q16627 93 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 CCDC184Q52MB2 194 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 SLC4A10Q6U841 1118 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 ZSCAN29Q8IWY8 852 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 ZFPM1Q8IX07 1006 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 PROCA1Q8NCQ7 364 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 WDR66Q8TBY9 1149 aa11.81□□□□□ -0.52
NEDD9-203ENST00000397378 ASCC2Q9H1I8 757 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-203ENST00000397378 ATRNL1Q5VV63 1379 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 DNM1LO00429 736 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 CTNND1O60716 968 aaKnown RBP11.8□□□□□ -0.52
NEDD9-203ENST00000397378 IFIT1P09914 478 aaKnown RBP11.8□□□□□ -0.52
NEDD9-203ENST00000397378 CNGA1P29973 690 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 ZEB1P37275 1124 aaPredicted RBP11.8□□□□□ -0.52
NEDD9-203ENST00000397378 CCAR1Q8IX12 1150 aaKnown RBP11.8□□□□□ -0.52
NEDD9-203ENST00000397378 BICC1Q9H694 974 aaKnown RBP11.8□□□□□ -0.52
NEDD9-203ENST00000397378 USP40Q9NVE5 1235 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 DAGLAQ9Y4D2 1042 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 RLFQ13129 1914 aa11.8□□□□□ -0.52
NEDD9-203ENST00000397378 SLURP2P0DP57 97 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 RGS2P41220 211 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 SPP2Q13103 211 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 PUM3Q15397 648 aaKnown RBP11.79□□□□□ -0.52
NEDD9-203ENST00000397378 DIXDC1Q155Q3 683 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 TRIM60Q495X7 471 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 AKNAD1Q5T1N1 836 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 ANKRD44Q8N8A2 993 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 TIFAQ96CG3 184 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 SPINK5Q9NQ38 1064 aaPredicted RBP11.79□□□□□ -0.52
NEDD9-203ENST00000397378 MORF4L1Q9UBU8 362 aa11.79□□□□□ -0.52
NEDD9-203ENST00000397378 DDX20Q9UHI6 824 aaKnown RBP11.79□□□□□ -0.52
NEDD9-203ENST00000397378 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-203ENST00000397378 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-203ENST00000397378 MSCO60682 206 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 PEX10O60683 326 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 HMGCS2P54868 508 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-203ENST00000397378 TMEM31Q5JXX7 168 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 SLC39A5Q6ZMH5 540 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 SH3RF1Q7Z6J0 888 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 LPAR1Q92633 364 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 APBA2Q99767 749 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 PRDM12Q9H4Q4 367 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 EPHX3Q9H6B9 360 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 CWC22Q9HCG8 908 aaKnown RBP11.78□□□□□ -0.52
NEDD9-203ENST00000397378 PDLIM7Q9NR12 457 aa11.78□□□□□ -0.52
NEDD9-203ENST00000397378 ATAD5Q96QE3 1844 aa11.77□□□□□ -0.52
NEDD9-203ENST00000397378 TRIM43BA6NCK2 446 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 KBTBD13C9JR72 458 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 MYCNP04198 464 aaPredicted RBP11.77□□□□□ -0.53
NEDD9-203ENST00000397378 SLC5A1P13866 664 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 IGFBP4P22692 258 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 MAPK4P31152 587 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 RGS3P49796 1198 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 MAP3K10Q02779 954 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 GJC2Q5T442 439 aaPredicted RBP11.77□□□□□ -0.53
NEDD9-203ENST00000397378 MFSD14CQ5VZR4 134 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 GPRC5AQ8NFJ5 357 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 KLHDC4Q8TBB5 520 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 LPIN2Q92539 896 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 TRIM43Q96BQ3 446 aaPredicted RBP11.77□□□□□ -0.53
NEDD9-203ENST00000397378 NCOR1O75376 2440 aa11.77□□□□□ -0.53
NEDD9-203ENST00000397378 ENTPD3O75355 529 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 PRDX5P30044 214 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms