RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ARHGAP45Q92619 1136 aa8□□□□□ -1.13
UPF2-203ENST00000397053 CCDC68Q9H2F9 335 aa8□□□□□ -1.13
UPF2-203ENST00000397053 LMCD1Q9NZU5 365 aa8□□□□□ -1.13
UPF2-203ENST00000397053 FEZ2Q9UHY8 353 aaPredicted RBP8□□□□□ -1.13
UPF2-203ENST00000397053 TYW5A2RUC4 315 aaKnown RBP8□□□□□ -1.13
UPF2-203ENST00000397053 PFDN6O15212 129 aa8□□□□□ -1.13
UPF2-203ENST00000397053 TMOD1P28289 359 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ATP5DP30049 168 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ADCY7P51828 1080 aa8□□□□□ -1.13
UPF2-203ENST00000397053 CCDC122Q5T0U0 273 aa8□□□□□ -1.13
UPF2-203ENST00000397053 UBL4BQ8N7F7 174 aa8□□□□□ -1.13
UPF2-203ENST00000397053 TEKT1Q969V4 418 aa8□□□□□ -1.13
UPF2-203ENST00000397053 TBC1D2Q9BYX2 928 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ASIC3Q9UHC3 531 aa8□□□□□ -1.13
UPF2-203ENST00000397053 V9GY48 417 aaPredicted RBP8□□□□□ -1.13
UPF2-203ENST00000397053 CCNT1O60563 726 aaKnown RBP8□□□□□ -1.13
UPF2-203ENST00000397053 PDE8AO60658 829 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ALAS1P13196 640 aa8□□□□□ -1.13
UPF2-203ENST00000397053 CCNA1P78396 465 aa8□□□□□ -1.13
UPF2-203ENST00000397053 NEDD9Q14511 834 aa8□□□□□ -1.13
UPF2-203ENST00000397053 NONOQ15233 471 aaKnown RBP eCLIP8□□□□□ -1.13
UPF2-203ENST00000397053 DNAJC21Q5F1R6 531 aaKnown RBP8□□□□□ -1.13
UPF2-203ENST00000397053 ZBTB33Q86T24 672 aa8□□□□□ -1.13
UPF2-203ENST00000397053 UBLCP1Q8WVY7 318 aaPredicted RBP8□□□□□ -1.13
UPF2-203ENST00000397053 RPS6KC1Q96S38 1066 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ESYT1Q9BSJ8 1104 aa8□□□□□ -1.13
UPF2-203ENST00000397053 SUGCTQ9HAC7 445 aa8□□□□□ -1.13
UPF2-203ENST00000397053 AATFQ9NY61 560 aaKnown RBP eCLIP8□□□□□ -1.13
UPF2-203ENST00000397053 HESX1Q9UBX0 185 aa8□□□□□ -1.13
UPF2-203ENST00000397053 B4E1Z4 1266 aa8□□□□□ -1.13
UPF2-203ENST00000397053 EYA2O00167 538 aa8□□□□□ -1.13
UPF2-203ENST00000397053 KARSQ15046 597 aaKnown RBP8□□□□□ -1.13
UPF2-203ENST00000397053 C20orf194Q5TEA3 1177 aa8□□□□□ -1.13
UPF2-203ENST00000397053 ZNF449Q6P9G9 518 aa8□□□□□ -1.13
UPF2-203ENST00000397053 PIK3AP1Q6ZUJ8 805 aa8□□□□□ -1.13
UPF2-203ENST00000397053 CNGA4Q8IV77 575 aa8□□□□□ -1.13
UPF2-203ENST00000397053 MAPKAPK5Q8IW41 473 aa8□□□□□ -1.13
UPF2-203ENST00000397053 IL16Q14005 1332 aa8□□□□□ -1.13
UPF2-203ENST00000397053 NCKAP5LQ9HCH0 1330 aa8□□□□□ -1.13
UPF2-203ENST00000397053 SPDYE2BA6NHP3 402 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 SPDYE6P0CI01 402 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 RFC1P35251 1148 aaPredicted RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 KIF11P52732 1056 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 TIMM10P62072 90 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 GTF2IP78347 998 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 ITKQ08881 620 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 ANKRD44Q8N8A2 993 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 ZFP91Q96JP5 570 aaPredicted RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 RSPH14Q9UHP6 348 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 LRFN2Q9ULH4 789 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 TTF2Q9UNY4 1162 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 CNPY2Q9Y2B0 182 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 TTC41PQ6P2S7 1318 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 NKTRP30414 1462 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 ATF7P17544 494 aaPredicted RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 TMTC4Q5T4D3 741 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 RSRC2Q7L4I2 434 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 NCAPG2Q86XI2 1143 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 DDX21Q9NR30 783 aaKnown RBP eCLIP7.99□□□□□ -1.13
UPF2-203ENST00000397053 IRAK4Q9NWZ3 460 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 ERICH3Q5RHP9 1530 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 KCTD2Q14681 263 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 SLC9C1Q4G0N8 1177 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 FYB2Q5VWT5 728 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 SPDYE1Q8NFV5 336 aaPredicted RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 IWS1Q96ST2 819 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 SRRTQ9BXP5 876 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 ARMT1Q9H993 441 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 ABT1Q9ULW3 272 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 SNAPC4Q5SXM2 1469 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 A0A1B0GUL7 405 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 GAS7O60861 476 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 DEXIO95424 95 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 POLR2BP30876 1174 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 DNM1Q05193 864 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 SEPT14Q6ZU15 432 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 SND1Q7KZF4 910 aaKnown RBP eCLIP7.99□□□□□ -1.13
UPF2-203ENST00000397053 KRT25Q7Z3Z0 450 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 MMS19Q96T76 1030 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 CCDC94Q9BW85 323 aaPredicted RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 USP40Q9NVE5 1235 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.99□□□□□ -1.13
UPF2-203ENST00000397053 DHX29Q7Z478 1369 aaKnown RBP7.99□□□□□ -1.13
UPF2-203ENST00000397053 NOS1P29475 1434 aa7.99□□□□□ -1.13
UPF2-203ENST00000397053 GOLGA6BA6NDN3 693 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 BCRP11274 1271 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 RAD51AP2Q09MP3 1159 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 ELMSAN1Q6PJG2 1045 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 TRIM50Q86XT4 487 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 CSGALNACT2Q8N6G5 542 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 TMEM87BQ96K49 555 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 AP5M1Q9H0R1 490 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 SWAP70Q9UH65 585 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 GOLGA6CA6NDK9 693 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 GOLGA6DP0CG33 693 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 TUBB4BP68371 445 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 ARHGEF16Q5VV41 709 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 GBP6Q6ZN66 633 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 SESTD1Q86VW0 696 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 ATP2A3Q93084 1043 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms