RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 PTPRAP18433 802 aa28.64■■■□□ 2.18
SHMT1-204ENST00000395682 ADD2P35612 726 aa28.64■■■□□ 2.18
SHMT1-204ENST00000395682 SLFNL1Q499Z3 407 aa28.64■■■□□ 2.18
SHMT1-204ENST00000395682 FOXP4Q8IVH2 680 aaPredicted RBP28.64■■■□□ 2.18
SHMT1-204ENST00000395682 OTUD7AQ8TE49 926 aaPredicted RBP28.64■■■□□ 2.18
SHMT1-204ENST00000395682 RWDD1Q9H446 243 aaPredicted RBP28.64■■■□□ 2.18
SHMT1-204ENST00000395682 ZHX2Q9Y6X8 837 aa28.64■■■□□ 2.18
SHMT1-204ENST00000395682 KCNH4Q9UQ05 1017 aa28.63■■■□□ 2.17
SHMT1-204ENST00000395682 ZNF296Q8WUU4 475 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-204ENST00000395682 TRIM34Q9BYJ4 488 aa28.62■■■□□ 2.17
SHMT1-204ENST00000395682 CRNKL1Q9BZJ0 848 aaKnown RBP28.62■■■□□ 2.17
SHMT1-204ENST00000395682 LAMB1P07942 1786 aa28.62■■■□□ 2.17
SHMT1-204ENST00000395682 HLA-DOAP06340 250 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 UBE3CQ15386 1083 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 SLC4A8Q2Y0W8 1093 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 NOM1Q5C9Z4 860 aaKnown RBP28.61■■■□□ 2.17
SHMT1-204ENST00000395682 ZSCAN25Q6NSZ9 544 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 METTL16Q86W50 562 aaKnown RBP28.61■■■□□ 2.17
SHMT1-204ENST00000395682 FAM43AQ8N2R8 423 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 CRACR2BQ8N4Y2 399 aaPredicted RBP28.61■■■□□ 2.17
SHMT1-204ENST00000395682 TTC41PQ6P2S7 1318 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 CDK5RAP2Q96SN8 1893 aa28.61■■■□□ 2.17
SHMT1-204ENST00000395682 CXCL11O14625 94 aa28.6■■■□□ 2.17
SHMT1-204ENST00000395682 CHGBP05060 677 aa28.6■■■□□ 2.17
SHMT1-204ENST00000395682 CRHR2Q13324 411 aa28.6■■■□□ 2.17
SHMT1-204ENST00000395682 RRP1BQ14684 758 aaKnown RBP28.6■■■□□ 2.17
SHMT1-204ENST00000395682 BTBD19C9JJ37 291 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 ERC2O15083 957 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 MX1P20591 662 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 LCORLQ8N3X6 602 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 ARMT1Q9H993 441 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.59■■■□□ 2.17
SHMT1-204ENST00000395682 AFG3L2Q9Y4W6 797 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 FOCADQ5VW36 1801 aa28.59■■■□□ 2.17
SHMT1-204ENST00000395682 FKTNO75072 461 aa28.58■■■□□ 2.17
SHMT1-204ENST00000395682 IGHDP01880 384 aa28.58■■■□□ 2.17
SHMT1-204ENST00000395682 CAP2P40123 477 aa28.58■■■□□ 2.17
SHMT1-204ENST00000395682 DGKZQ13574 1117 aa28.58■■■□□ 2.17
SHMT1-204ENST00000395682 KBTBD3Q8NAB2 608 aa28.58■■■□□ 2.17
SHMT1-204ENST00000395682 GLRX3O76003 335 aaKnown RBP28.57■■■□□ 2.16
SHMT1-204ENST00000395682 MBD4O95243 580 aa28.57■■■□□ 2.16
SHMT1-204ENST00000395682 IRX6P78412 446 aaPredicted RBP28.57■■■□□ 2.16
SHMT1-204ENST00000395682 TAF1CQ15572 869 aaPredicted RBP28.57■■■□□ 2.16
SHMT1-204ENST00000395682 TTC6Q86TZ1 520 aa28.57■■■□□ 2.16
SHMT1-204ENST00000395682 PI4K2BQ8TCG2 481 aa28.57■■■□□ 2.16
SHMT1-204ENST00000395682 DNAJC18Q9H819 358 aa28.57■■■□□ 2.16
SHMT1-204ENST00000395682 CCDC84Q86UT8 332 aaPredicted RBP28.56■■■□□ 2.16
SHMT1-204ENST00000395682 SDR42E1Q8WUS8 393 aa28.56■■■□□ 2.16
SHMT1-204ENST00000395682 MCOLN1Q9GZU1 580 aa28.56■■■□□ 2.16
SHMT1-204ENST00000395682 ZFYVE28Q9HCC9 887 aa28.56■■■□□ 2.16
SHMT1-204ENST00000395682 POLR3DP05423 398 aaPredicted RBP28.55■■■□□ 2.16
SHMT1-204ENST00000395682 MOGSQ13724 837 aa28.55■■■□□ 2.16
SHMT1-204ENST00000395682 B4GALNT3Q6L9W6 998 aa28.55■■■□□ 2.16
SHMT1-204ENST00000395682 CTU1Q7Z7A3 348 aaKnown RBP28.55■■■□□ 2.16
SHMT1-204ENST00000395682 SMC5Q8IY18 1101 aa28.55■■■□□ 2.16
SHMT1-204ENST00000395682 ZCCHC17Q9NP64 241 aaKnown RBP28.55■■■□□ 2.16
SHMT1-204ENST00000395682 SALL3Q9BXA9 1300 aa28.54■■■□□ 2.16
SHMT1-204ENST00000395682 ANKRD23Q86SG2 305 aa28.54■■■□□ 2.16
SHMT1-204ENST00000395682 PUS7LQ9H0K6 701 aaKnown RBP28.54■■■□□ 2.16
SHMT1-204ENST00000395682 DCP1AQ9NPI6 582 aaPredicted RBP28.54■■■□□ 2.16
SHMT1-204ENST00000395682 MCM9Q9NXL9 1143 aa28.54■■■□□ 2.16
SHMT1-204ENST00000395682 SERPINB13Q9UIV8 391 aa28.54■■■□□ 2.16
SHMT1-204ENST00000395682 MYH1P12882 1939 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 SIPA1L1O43166 1804 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 A0A0G2JLL6 359 aaPredicted RBP28.53■■■□□ 2.16
SHMT1-204ENST00000395682 TRIM75PA6NK02 468 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 RNF113AO15541 343 aaKnown RBP28.53■■■□□ 2.16
SHMT1-204ENST00000395682 PRKAB2O43741 272 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 CAPN15O75808 1086 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 PLCD1P51178 756 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 PRRT2Q7Z6L0 340 aaPredicted RBP28.53■■■□□ 2.16
SHMT1-204ENST00000395682 ABHD8Q96I13 439 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 EHD4Q9H223 541 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 DOCK1Q14185 1865 aa28.53■■■□□ 2.16
SHMT1-204ENST00000395682 USP17L5A8MUK1 530 aa28.52■■■□□ 2.16
SHMT1-204ENST00000395682 FASTKD5Q7L8L6 764 aaKnown RBP28.52■■■□□ 2.16
SHMT1-204ENST00000395682 STAP2Q9UGK3 403 aa28.52■■■□□ 2.16
SHMT1-204ENST00000395682 PDHXO00330 501 aa28.51■■■□□ 2.15
SHMT1-204ENST00000395682 JAG1P78504 1218 aa28.51■■■□□ 2.15
SHMT1-204ENST00000395682 SPP2Q13103 211 aa28.51■■■□□ 2.15
SHMT1-204ENST00000395682 LNPKQ9C0E8 428 aa28.51■■■□□ 2.15
SHMT1-204ENST00000395682 ATP8A2Q9NTI2 1148 aa28.51■■■□□ 2.15
SHMT1-204ENST00000395682 GDF11O95390 407 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 ZFYP08048 801 aaPredicted RBP28.5■■■□□ 2.15
SHMT1-204ENST00000395682 ASNSP08243 561 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 GPAT2Q6NUI2 795 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 GADL1Q6ZQY3 521 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 ZNF280CQ8ND82 737 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 TBC1D2Q9BYX2 928 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 SLC4A4Q9Y6R1 1079 aa28.5■■■□□ 2.15
SHMT1-204ENST00000395682 PDE1AP54750 535 aa28.49■■■□□ 2.15
SHMT1-204ENST00000395682 SP3Q02447 781 aa28.49■■■□□ 2.15
SHMT1-204ENST00000395682 SHROOM1Q2M3G4 852 aaPredicted RBP28.49■■■□□ 2.15
SHMT1-204ENST00000395682 LRRFIP1Q32MZ4 808 aaKnown RBP28.49■■■□□ 2.15
SHMT1-204ENST00000395682 TATDN1Q6P1N9 297 aa28.49■■■□□ 2.15
SHMT1-204ENST00000395682 GINM1Q9NU53 330 aa28.49■■■□□ 2.15
SHMT1-204ENST00000395682 MYH7P12883 1935 aa28.49■■■□□ 2.15
SHMT1-204ENST00000395682 TLR2O60603 784 aa28.48■■■□□ 2.15
SHMT1-204ENST00000395682 APPBP2Q92624 585 aa28.48■■■□□ 2.15
SHMT1-204ENST00000395682 OSBP2Q969R2 916 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms