RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.51■□□□□ 0.39
GPC3-202ENST00000394299 POLLQ9UGP5 575 aa17.51■□□□□ 0.39
GPC3-202ENST00000394299 BRWD3Q6RI45 1802 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 PDS5AQ29RF7 1337 aaKnown RBP17.5■□□□□ 0.39
GPC3-202ENST00000394299 ADCY5O95622 1261 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 UVSSAQ2YD98 709 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 ANO1Q5XXA6 986 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 RBM43Q6ZSC3 357 aaKnown RBP17.5■□□□□ 0.39
GPC3-202ENST00000394299 BRAPQ7Z569 592 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 SH3RF3Q8TEJ3 882 aaPredicted RBP17.5■□□□□ 0.39
GPC3-202ENST00000394299 MYH2Q9UKX2 1941 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 MYH15Q9Y2K3 1946 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 SPTLC2O15270 562 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 CRACR2BQ8N4Y2 399 aaPredicted RBP17.5■□□□□ 0.39
GPC3-202ENST00000394299 CD209Q9NNX6 404 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 MCM9Q9NXL9 1143 aa17.5■□□□□ 0.39
GPC3-202ENST00000394299 BTBD18B2RXH4 712 aa17.49■□□□□ 0.39
GPC3-202ENST00000394299 WDHD1O75717 1129 aaPredicted RBP17.49■□□□□ 0.39
GPC3-202ENST00000394299 NDUFA8P51970 172 aa17.49■□□□□ 0.39
GPC3-202ENST00000394299 GNL2Q13823 731 aaKnown RBP17.49■□□□□ 0.39
GPC3-202ENST00000394299 DYNLL2Q96FJ2 89 aa17.49■□□□□ 0.39
GPC3-202ENST00000394299 RBM17Q96I25 401 aaKnown RBP17.49■□□□□ 0.39
GPC3-202ENST00000394299 POLR3EQ9NVU0 708 aa17.49■□□□□ 0.39
GPC3-202ENST00000394299 CLCN1P35523 988 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 ADALQ6DHV7 355 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 CCDC73Q6ZRK6 1079 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 TMTC2Q8N394 836 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 SHISA4Q96DD7 197 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.48■□□□□ 0.39
GPC3-202ENST00000394299 DNAJC25Q9H1X3 360 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 FGRP09769 529 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 IFIT1BQ5T764 474 aaKnown RBP17.48■□□□□ 0.39
GPC3-202ENST00000394299 ZNF804AQ7Z570 1209 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 ZSCAN30Q86W11 494 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 COL23A1Q86Y22 540 aaPredicted RBP17.48■□□□□ 0.39
GPC3-202ENST00000394299 WDR66Q8TBY9 1149 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 FBXW7Q969H0 707 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 GGA1Q9UJY5 639 aa17.48■□□□□ 0.39
GPC3-202ENST00000394299 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.48■□□□□ 0.395e-56■■■■■ 33.6
GPC3-202ENST00000394299 PLEKHA8P1O95397 391 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 FAM160A1Q05DH4 1040 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 TRIM29Q14134 588 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 SPTY2D1Q68D10 685 aaPredicted RBP17.47■□□□□ 0.39
GPC3-202ENST00000394299 ZNF830Q96NB3 372 aaPredicted RBP17.47■□□□□ 0.39
GPC3-202ENST00000394299 CBX8Q9HC52 389 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 ATP8A2Q9NTI2 1148 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 APBA3O96018 575 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 SASS6Q6UVJ0 657 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 FMR1NBQ8N0W7 255 aaPredicted RBP17.47■□□□□ 0.39
GPC3-202ENST00000394299 TGFBRAP1Q8WUH2 860 aa17.47■□□□□ 0.39
GPC3-202ENST00000394299 MRPS27Q92552 414 aaKnown RBP17.47■□□□□ 0.39
GPC3-202ENST00000394299 C6orf229H3BNL8 230 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 RIMBP2O15034 1052 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 YEATS4O95619 227 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 U2AF2P26368 475 aaKnown RBP eCLIP17.46■□□□□ 0.392e-8■■□□□ 13.1
GPC3-202ENST00000394299 USP5P45974 858 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 NR5A1Q13285 461 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 AXDND1Q5T1B0 1012 aaPredicted RBP17.46■□□□□ 0.39
GPC3-202ENST00000394299 TBC1D16Q8TBP0 767 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 FAM200AQ8TCP9 573 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 OXER1Q8TDS5 423 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 PTMAP06454 111 aaKnown RBP17.46■□□□□ 0.39
GPC3-202ENST00000394299 IQCA1Q86XH1 822 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 TRIM22Q8IYM9 498 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 CLIC6Q96NY7 704 aa17.46■□□□□ 0.39
GPC3-202ENST00000394299 MKRN1Q9UHC7 482 aaKnown RBP17.46■□□□□ 0.39
GPC3-202ENST00000394299 SAP30BPQ9UHR5 308 aaKnown RBP17.46■□□□□ 0.39
GPC3-202ENST00000394299 KINO60870 393 aaKnown RBP17.45■□□□□ 0.38
GPC3-202ENST00000394299 ATP2B4P23634 1241 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 TROAPQ12815 778 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 SLC39A14Q15043 492 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 DIS3L2Q8IYB7 885 aaKnown RBP17.45■□□□□ 0.38
GPC3-202ENST00000394299 KCNG4Q8TDN1 519 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 PIBF1Q8WXW3 757 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 MAP3K14Q99558 947 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 MTA3Q9BTC8 594 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 STK36Q9NRP7 1315 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 DUOX1Q9NRD9 1551 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 NID2Q14112 1375 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 BBOX1O75936 387 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 MMP1P03956 469 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 PTPAQ15257 358 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 MAPKAPK5Q8IW41 473 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 SLC44A5Q8NCS7 719 aa17.45■□□□□ 0.38
GPC3-202ENST00000394299 V9GY48 417 aaPredicted RBP17.45■□□□□ 0.38
GPC3-202ENST00000394299 ATP2B1P20020 1258 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 HOXA10P31260 410 aaPredicted RBP17.44■□□□□ 0.38
GPC3-202ENST00000394299 TOB1P50616 345 aaPredicted RBP17.44■□□□□ 0.38
GPC3-202ENST00000394299 PLCD1P51178 756 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 MSL1Q68DK7 614 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 C11orf57Q6ZUT1 292 aaPredicted RBP17.44■□□□□ 0.38
GPC3-202ENST00000394299 CATIPQ7Z7H3 387 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 VPS54Q9P1Q0 977 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 NOL7Q9UMY1 257 aaKnown RBP17.44■□□□□ 0.38
GPC3-202ENST00000394299 CCDC196A0A1B0GTZ2 297 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 TSPY2A6NKD2 308 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 DEXIO95424 95 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 FUT2Q10981 343 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 PKN1Q16512 942 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 SBK1Q52WX2 424 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms