RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 TRAF5O00463 557 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 IREB2P48200 963 aaKnown RBP12.07□□□□□ -0.48
VPS53-202ENST00000389040 NUCB2P80303 420 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 TCP10Q12799 353 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 PICALMQ13492 652 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 ALX1Q15699 326 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 ZSCAN29Q8IWY8 852 aaPredicted RBP12.07□□□□□ -0.48
VPS53-202ENST00000389040 TMX3Q96JJ7 454 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 CSRNP1Q96S65 589 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 GBA2Q9HCG7 927 aaPredicted RBP12.07□□□□□ -0.48
VPS53-202ENST00000389040 GINM1Q9NU53 330 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 MYH2Q9UKX2 1941 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 TRAK2O60296 914 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 HSPA6P17066 643 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 SBK1Q52WX2 424 aa12.07□□□□□ -0.48
VPS53-202ENST00000389040 NBPF12Q5TAG4 269 aaPredicted RBP12.07□□□□□ -0.48
VPS53-202ENST00000389040 ARPP21Q9UBL0 812 aaPredicted RBP12.07□□□□□ -0.48
VPS53-202ENST00000389040 ZMYM6O95789 1325 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 GSG1L2A8MUP6 293 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 PTMSP20962 102 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 NT5C2P49902 561 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 NMIQ13287 307 aaPredicted RBP12.06□□□□□ -0.48
VPS53-202ENST00000389040 CLEC17AQ6ZS10 378 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 ZNF341Q9BYN7 854 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 UPF3BQ9BZI7 483 aaKnown RBP12.06□□□□□ -0.48
VPS53-202ENST00000389040 SNX14Q9Y5W7 946 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 TLL2Q9Y6L7 1015 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 CCDC171Q6TFL3 1326 aa12.06□□□□□ -0.48
VPS53-202ENST00000389040 M0R2C6 588 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 POLR3DP05423 398 aaPredicted RBP12.05□□□□□ -0.48
VPS53-202ENST00000389040 LDLRAD1Q5T700 205 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SAPCD2Q86UD0 394 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 MAPKAPK5Q8IW41 473 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 ZFPM1Q8IX07 1006 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 FAM227BQ96M60 508 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 ZNF287Q9HBT7 754 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 MCM9Q9NXL9 1143 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SERPINB13Q9UIV8 391 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 ZNF112Q9UJU3 913 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 ECM29Q5VYK3 1845 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 A0A0D9SFI3 127 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 DDTLA6NHG4 134 aaPredicted RBP12.05□□□□□ -0.48
VPS53-202ENST00000389040 APPP05067 770 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 CUL4AQ13619 759 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SLFNL1Q499Z3 407 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SH3BP5LQ7L8J4 393 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 ANKRD13AQ8IZ07 590 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 IFNL3Q8IZI9 196 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SDR42E1Q8WUS8 393 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 KLRG1Q96E93 195 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SEC62Q99442 399 aaKnown RBP12.05□□□□□ -0.48
VPS53-202ENST00000389040 DSCC1Q9BVC3 393 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 SWAP70Q9UH65 585 aa12.05□□□□□ -0.48
VPS53-202ENST00000389040 USP2O75604 605 aaPredicted RBP12.04□□□□□ -0.48
VPS53-202ENST00000389040 CHGBP05060 677 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 PTH1RQ03431 593 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 C12orf60Q5U649 245 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 PRAMEF18Q5VWM3 479 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 INTS4Q96HW7 963 aaKnown RBP12.04□□□□□ -0.48
VPS53-202ENST00000389040 TRIM34Q9BYJ4 488 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 ZNF408Q9H9D4 720 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 CTNNA3Q9UI47 895 aa12.04□□□□□ -0.48
VPS53-202ENST00000389040 RASSF10A6NK89 507 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 PRKAB2O43741 272 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 CTNND1O60716 968 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 BAG4O95429 457 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 SLC3A2P08195 630 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 HSPD1P10809 573 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 PCP11498 1178 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 MAP3K9P80192 1104 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 TTLL12Q14166 644 aaPredicted RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 CTR9Q6PD62 1173 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 CRACR2BQ8N4Y2 399 aaPredicted RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS53-202ENST00000389040 CCDC102AQ96A19 550 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 NAPBQ9H115 298 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS53-202ENST00000389040 SCAF8Q9UPN6 1271 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 USP17L12C9JPN9 530 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 USP17L21D6R901 530 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 TDO2P48775 406 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 GABPAQ06546 454 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 PKP1Q13835 747 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 NOL8Q76FK4 1167 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 KCNB2Q92953 911 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 ANAPC4Q9UJX5 808 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 ANGEL1Q9UNK9 670 aaKnown RBP12.03□□□□□ -0.48
VPS53-202ENST00000389040 CSADQ9Y600 493 aa12.03□□□□□ -0.48
VPS53-202ENST00000389040 PHF20L1A8MW92 1017 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 ECE1P42892 770 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 HUNKP57058 714 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 SKOR2Q2VWA4 1001 aaPredicted RBP12.02□□□□□ -0.49
VPS53-202ENST00000389040 NOL9Q5SY16 702 aaKnown RBP12.02□□□□□ -0.49
VPS53-202ENST00000389040 TATDN1Q6P1N9 297 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 REM2Q8IYK8 340 aaPredicted RBP12.02□□□□□ -0.49
VPS53-202ENST00000389040 CCDC17Q96LX7 622 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 TTC14Q96N46 770 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms