RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SMARCA4P51532 1647 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 TRAF5O00463 557 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 PPP2R5DQ14738 602 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 CTNNA1P35221 906 aaKnown RBP12.88□□□□□ -0.35
VPS13A-205ENST00000376636 PRIM1P49642 420 aaKnown RBP12.88□□□□□ -0.35
VPS13A-205ENST00000376636 FAM69CQ0P6D2 419 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 LRRC23Q53EV4 343 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-205ENST00000376636 RSAD2Q8WXG1 361 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 BRF1Q92994 677 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 RABEP2Q9H5N1 569 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 GOLGA8KD6RF30 607 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 MAN1A1P33908 653 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 CENPKQ9BS16 269 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 EFCAB5A4FU69 1503 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 ZSCAN26Q16670 478 aa12.88□□□□□ -0.35
VPS13A-205ENST00000376636 E9PMD0 336 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 FCHSD1Q86WN1 690 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 DDX41Q9UJV9 622 aaKnown RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 NUTM2BA6NNL0 878 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 NUTM2EB1AL46 878 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 ZBTB24O43167 697 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 ARHGAP6O43182 974 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 AKNAD1Q5T1N1 836 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 EFHD1Q9BUP0 239 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 GLT8D2Q9H1C3 349 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 BAG2O95816 211 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 OAS2P29728 719 aaKnown RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 RNASELQ05823 741 aaKnown RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 ZNF804AQ7Z570 1209 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 GAPVD1Q14C86 1478 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 NUCB1Q02818 461 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 RSBN1LQ6PCB5 846 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-205ENST00000376636 TMTC1Q8IUR5 882 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 MED4Q9NPJ6 270 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 MAP3K2Q9Y2U5 619 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 TBC1D8BQ0IIM8 1120 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 SLC52A1Q9NWF4 448 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 POGZQ7Z3K3 1410 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 TRIM60Q495X7 471 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 UBE3BQ7Z3V4 1068 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 SNX21Q969T3 373 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 CLSTN2Q9H4D0 955 aa12.87□□□□□ -0.35
VPS13A-205ENST00000376636 P4HA1P13674 534 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 PEX26Q7Z412 305 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 SLC4A4Q9Y6R1 1079 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TMTC4Q5T4D3 741 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 PPWD1Q96BP3 646 aaKnown RBP12.86□□□□□ -0.35
VPS13A-205ENST00000376636 DAAM1Q9Y4D1 1078 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TTC21BQ7Z4L5 1316 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 FBXO41Q8TF61 875 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TEKT1Q969V4 418 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CEP19Q96LK0 163 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 POTEB3A0JP26 581 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TRIM27P14373 513 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 POTEBQ6S5H4 581 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 ANGPTL3Q9Y5C1 460 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CTAGE3PQ8IX95 158 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 RIOK1Q9BRS2 568 aaKnown RBP12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CASKIN1Q8WXD9 1431 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 BACH1O14867 736 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 MYRIPQ8NFW9 859 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 INTS4Q96HW7 963 aaKnown RBP12.86□□□□□ -0.35
VPS13A-205ENST00000376636 RIC8AQ9NPQ8 531 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 VPS37BQ9H9H4 285 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 RALGAPBQ86X10 1494 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CEP104O60308 925 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 YWHAEP62258 255 aaKnown RBP12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TMED1Q13445 227 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CCDC84Q86UT8 332 aaPredicted RBP12.86□□□□□ -0.35
VPS13A-205ENST00000376636 PALM2Q8IXS6 379 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 CCDC13Q8IYE1 715 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 TTLL3Q9Y4R7 772 aa12.86□□□□□ -0.35
VPS13A-205ENST00000376636 RAD51AP2Q09MP3 1159 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 BRD3Q15059 726 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 TRIM31Q9BZY9 425 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 U2AF2P26368 475 aaKnown RBP eCLIP12.85□□□□□ -0.351e-6■■■□□ 18.1
VPS13A-205ENST00000376636 ATP6V0A1Q93050 837 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 DKC1O60832 514 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 EEF1DP29692 281 aaKnown RBP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 CFAP61Q8NHU2 1237 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 NSD2O96028 1365 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 CFAP65Q6ZU64 1925 aaKnown RBP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 RPS6KA1Q15418 735 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 MIS18AQ9NYP9 233 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 BRDTQ58F21 947 aaPredicted RBP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 MGARPQ8TDB4 240 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 ESYT2A0FGR8 921 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 PCYT1AP49585 367 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 STX17P56962 302 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 POLR3CQ9BUI4 534 aaPredicted RBP12.85□□□□□ -0.35
VPS13A-205ENST00000376636 ELF2Q15723 593 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 SH2D4AQ9H788 454 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 SCOCQ9UIL1 159 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 MAD1L1Q9Y6D9 718 aa12.85□□□□□ -0.35
VPS13A-205ENST00000376636 SART1O43290 800 aaKnown RBP12.84□□□□□ -0.35
VPS13A-205ENST00000376636 LMNAP02545 664 aaKnown RBP12.84□□□□□ -0.35
VPS13A-205ENST00000376636 LMNB1P20700 586 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms