RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 KDM4AO75164 1064 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 FMNL1O95466 1100 aaPredicted RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 ADD1P35611 737 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 GNAQP50148 359 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 RBM6P78332 1123 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 CCT2P78371 535 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 PPARAQ07869 468 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 SEMA3FQ13275 785 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 SF3A1Q15459 793 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 ZRSR1Q15695 479 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 TCEANC2Q96MN5 208 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 RIOK1Q9BRS2 568 aaKnown RBP10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 LY9Q9HBG7 655 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 ZSWIM5Q9P217 1185 aa10.11□□□□□ -0.79
SNRNP40-202ENST00000373720 C4BP0C0L5 1744 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 FAM237AA0A1B0GTK4 181 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 GOLGA8AA7E2F4 631 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 PLSCR1O15162 318 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 CHRM1P11229 460 aaPredicted RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 FDPSP14324 419 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 CMA1P23946 247 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 TM4SF1P30408 202 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 KIF5BP33176 963 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 PSEN1P49768 467 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 AKAP17AQ02040 695 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 GNL2Q13823 731 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 SLC39A14Q15043 492 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 MYSM1Q5VVJ2 828 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 KANK3Q6NY19 840 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 PI16Q6UXB8 463 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 CATIPQ7Z7H3 387 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 DGKHQ86XP1 1220 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 NLGN1Q8N2Q7 840 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 LINC00301Q8NCQ3 95 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 HELBQ8NG08 1087 aaPredicted RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 MRPS27Q92552 414 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 ANKS1AQ92625 1134 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 RPGRQ92834 1020 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 NSUN4Q96CB9 384 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 DDX11Q96FC9 970 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 BPIFA3Q9BQP9 254 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 LZTS2Q9BRK4 669 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 LARP6Q9BRS8 491 aaKnown RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 PANK2Q9BZ23 570 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 TMX4Q9H1E5 349 aaPredicted RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 BRMS1Q9HCU9 246 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 ANO10Q9NW15 660 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 DACT1Q9NYF0 836 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 NAP1L2Q9ULW6 460 aaPredicted RBP10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 KIAA1551Q9HCM1 1747 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 TAF1LQ8IZX4 1826 aa10.1□□□□□ -0.79
SNRNP40-202ENST00000373720 AFF2P51816 1311 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 MAST2Q6P0Q8 1798 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 SPTLC2O15270 562 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 NEMFO60524 1076 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 SMARCA1P28370 1054 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 HAND2P61296 217 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 TPM4P67936 248 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 KIF23Q02241 960 aaPredicted RBP10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 KIAA2012Q0VF49 1180 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 STK38Q15208 465 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 NTRK3Q16288 839 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 RTN1Q16799 776 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 GRIPAP1Q4V328 841 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 ZNF772Q68DY9 489 aaPredicted RBP10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 GALNT17Q6IS24 598 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 FERMT3Q86UX7 667 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 TBC1D10CQ8IV04 446 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 SEPT12Q8IYM1 358 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 FANCBQ8NB91 859 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 TDRD7Q8NHU6 1098 aaKnown RBP10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 ZSCAN10Q96SZ4 725 aaPredicted RBP10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 ALG1Q9BT22 464 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 ARMT1Q9H993 441 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 GDPD2Q9HCC8 539 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 TCP11L1Q9NUJ3 509 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 ABCF2Q9UG63 623 aa10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 NSFL1CQ9UNZ2 370 aaKnown RBP10.09□□□□□ -0.79
SNRNP40-202ENST00000373720 B4E1Z4 1266 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 CUTAO60888 179 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 LDHBP07195 334 aaKnown RBP10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 ALDH1B1P30837 517 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 ME1P48163 572 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 TRAPPC10P48553 1259 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 VASPP50552 380 aaPredicted RBP10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 TYRO3Q06418 890 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 STX1AQ16623 288 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 ANO1Q5XXA6 986 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 LCORLQ8N3X6 602 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 CRACR2BQ8N4Y2 399 aaPredicted RBP10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 CELF1Q92879 486 aaKnown RBP10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 LRRC2Q9BYS8 371 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 NBPF3Q9H094 633 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 EPB41L4AQ9HCS5 686 aaPredicted RBP10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 ZKSCAN5Q9Y2L8 839 aa10.08□□□□□ -0.8
SNRNP40-202ENST00000373720 SBF2Q86WG5 1849 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 A0A1B0GUL6 1792 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 ROBO3Q96MS0 1386 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 FAM205CA6NFA0 338 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 FAM177BA6PVY3 158 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms