RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZCRB1Q8TBF4 217 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 SMARCE1Q969G3 411 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 IRX2Q9BZI1 471 aaPredicted RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 UBXN6Q9BZV1 441 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 GREM2Q9H772 168 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 RAI14Q9P0K7 980 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 HOOK1Q9UJC3 728 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 SLC12A7Q9Y666 1083 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 TACC3Q9Y6A5 838 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 IFIT3O14879 490 aaKnown RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 FMNL1O95466 1100 aaPredicted RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 HNRNPH2P55795 449 aaKnown RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 ST5P78524 1137 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 TEX13AQ9BXU3 409 aaPredicted RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 EPB41L4AQ9HCS5 686 aaPredicted RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 STK36Q9NRP7 1315 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 MMP1P03956 469 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 ATP2B1P20020 1258 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 PHKA1P46020 1223 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 MORC3Q14149 939 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 UBE3CQ15386 1083 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 CCDC82Q8N4S0 544 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 ENOX1Q8TC92 643 aaKnown RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 CCDC12Q8WUD4 166 aaPredicted RBP18.74■□□□□ 0.59
SDC4-201ENST00000372733 PARD6BQ9BYG5 372 aa18.74■□□□□ 0.59
SDC4-201ENST00000372733 SOWAHDA6NJG2 315 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 ITGA6P23229 1130 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 PTPREP23469 700 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 IRX5P78411 483 aaPredicted RBP18.73■□□□□ 0.59
SDC4-201ENST00000372733 USP49Q70CQ1 688 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 MLKLQ8NB16 471 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 ZSWIM4Q9H7M6 989 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 CNNM1Q9NRU3 951 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 PCDHB6Q9Y5E3 794 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 ERVV-2B6SEH9 535 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 GPTP24298 496 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 NR5A1Q13285 461 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 CMTR1Q8N1G2 835 aaKnown RBP18.73■□□□□ 0.59
SDC4-201ENST00000372733 AIDAQ96BJ3 306 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 PLA2G12BQ9BX93 195 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 ZSWIM5Q9P217 1185 aa18.73■□□□□ 0.59
SDC4-201ENST00000372733 A0A0U1RQJ8 604 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 SARSP49591 514 aaKnown RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 SMC1AQ14683 1233 aaKnown RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 NT5DC1Q5TFE4 455 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 ZBTB38Q8NAP3 1195 aaPredicted RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 ATRIPQ8WXE1 791 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 TRERF1Q96PN7 1200 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 STRBPQ96SI9 672 aaKnown RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 MAP3K15Q6ZN16 1313 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 PAPPAQ13219 1627 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 TCRBV5S4A2TA0A5A2 114 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 ATP8B1O43520 1251 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 TTF1Q15361 905 aaPredicted RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 SAFBQ15424 915 aaKnown RBP eCLIP18.72■□□□□ 0.59
SDC4-201ENST00000372733 NUTM2AQ8IVF1 878 aaPredicted RBP18.72■□□□□ 0.59
SDC4-201ENST00000372733 TTLL11Q8NHH1 800 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 ZKSCAN3Q9BRR0 538 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 ARFGAP3Q9NP61 516 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 DACH1Q9UI36 760 aa18.72■□□□□ 0.59
SDC4-201ENST00000372733 ACTN4O43707 911 aaKnown RBP18.71■□□□□ 0.59
SDC4-201ENST00000372733 IFNAR1P17181 557 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 RABGGTAQ92696 567 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 GOLGA1Q92805 767 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 LZTFL1Q9NQ48 299 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 TMEM51Q9NW97 253 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 TBC1D2BQ9UPU7 963 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 TNS3Q68CZ2 1445 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 TEX33O43247 280 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 LIFRP42702 1097 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 RRP12Q5JTH9 1297 aaKnown RBP18.71■□□□□ 0.59
SDC4-201ENST00000372733 ELOA2Q8IYF1 753 aaPredicted RBP18.71■□□□□ 0.59
SDC4-201ENST00000372733 VGLL2Q8N8G2 317 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 NAPBQ9H115 298 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 TNS2Q63HR2 1409 aa18.71■□□□□ 0.59
SDC4-201ENST00000372733 MBD4O95243 580 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 ATF3P18847 181 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 PLCD1P51178 756 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 TRIM28Q13263 835 aaKnown RBP18.7■□□□□ 0.58
SDC4-201ENST00000372733 NR1I3Q14994 352 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 KIF6Q6ZMV9 814 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 OXER1Q8TDS5 423 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 LRP6O75581 1613 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 TOM1L2Q6ZVM7 507 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 FUT8Q9BYC5 575 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 A0A1B0GTH6 734 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 AKR1B15C9JRZ8 316 aaPredicted RBP18.7■□□□□ 0.58
SDC4-201ENST00000372733 CCDC175P0C221 793 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 GYS2P54840 703 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 RTN1Q16799 776 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 KLHL10Q6JEL2 608 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 RAD9BQ6WBX8 426 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 IFNL3Q8IZI9 196 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 WASF1Q92558 559 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 CSRNP2Q9H175 543 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 ARMT1Q9H993 441 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 TOMM22Q9NS69 142 aa18.7■□□□□ 0.58
SDC4-201ENST00000372733 STX17P56962 302 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 RILPL1Q5EBL4 403 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 CPLX3Q8WVH0 158 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms