RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TREML2Q5T2D2 321 aa17.18■□□□□ 0.34
VPS29-201ENST00000360579 GDF15Q99988 308 aa17.18■□□□□ 0.34
VPS29-201ENST00000360579 NBPF3Q9H094 633 aa17.18■□□□□ 0.34
VPS29-201ENST00000360579 OSBPL5Q9H0X9 879 aaPredicted RBP17.18■□□□□ 0.34
VPS29-201ENST00000360579 DDX4Q9NQI0 724 aaKnown RBP17.18■□□□□ 0.34
VPS29-201ENST00000360579 MROH7-TTC4A0A0A0MT08 1334 aa17.18■□□□□ 0.34
VPS29-201ENST00000360579 RPTORQ8N122 1335 aa17.18■□□□□ 0.34
VPS29-201ENST00000360579 E9PSI1 815 aa17.17■□□□□ 0.34
VPS29-201ENST00000360579 DOCK1Q14185 1865 aa17.17■□□□□ 0.34
VPS29-201ENST00000360579 ALDH1L2Q3SY69 923 aa17.17■□□□□ 0.34
VPS29-201ENST00000360579 ZNF280CQ8ND82 737 aa17.17■□□□□ 0.34
VPS29-201ENST00000360579 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS29-201ENST00000360579 HMX1Q9NP08 348 aaPredicted RBP17.17■□□□□ 0.34
VPS29-201ENST00000360579 GPR75-ASB3A0A0A6YYF3 556 aa17.16■□□□□ 0.34
VPS29-201ENST00000360579 MNX1P50219 401 aaPredicted RBP17.16■□□□□ 0.34
VPS29-201ENST00000360579 RASGRF1Q13972 1273 aa17.16■□□□□ 0.34
VPS29-201ENST00000360579 C7orf61Q8IZ16 206 aa17.16■□□□□ 0.34
VPS29-201ENST00000360579 DIS3LQ8TF46 1054 aaKnown RBP17.16■□□□□ 0.34
VPS29-201ENST00000360579 COPRSQ9NQ92 184 aa17.16■□□□□ 0.34
VPS29-201ENST00000360579 CUL9Q8IWT3 2517 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 ADORA1P30542 326 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 GSTO1P78417 241 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 SPP2Q13103 211 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 ERICH6Q7L0X2 663 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
VPS29-201ENST00000360579 AKAP2Q9Y2D5 859 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 PTPRFP10586 1907 aa17.15■□□□□ 0.34
VPS29-201ENST00000360579 MYH2Q9UKX2 1941 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 COL2A1P02458 1487 aaPredicted RBP17.14■□□□□ 0.33
VPS29-201ENST00000360579 LDHCP07864 332 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 HMGCS2P54868 508 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 RHBDL3P58872 404 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 MVPQ14764 893 aaKnown RBP17.14■□□□□ 0.33
VPS29-201ENST00000360579 LRIT3Q3SXY7 679 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 CCDC84Q86UT8 332 aaPredicted RBP17.14■□□□□ 0.33
VPS29-201ENST00000360579 C11orf49Q9H6J7 331 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 AS3MTQ9HBK9 375 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 SMC4Q9NTJ3 1288 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 GJD2Q9UKL4 321 aa17.14■□□□□ 0.33
VPS29-201ENST00000360579 PHIPQ8WWQ0 1821 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 USP17L5A8MUK1 530 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 SLURP2P0DP57 97 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 MECOMQ03112 1051 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 SH3D19Q5HYK7 790 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 DEFB123Q8N688 67 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 ASCC2Q9H1I8 757 aaPredicted RBP17.13■□□□□ 0.33
VPS29-201ENST00000360579 MORF4L1Q9UBU8 362 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 OGDHLQ9ULD0 1010 aa17.13■□□□□ 0.33
VPS29-201ENST00000360579 ZMYND8Q9ULU4 1186 aaPredicted RBP17.13■□□□□ 0.33
VPS29-201ENST00000360579 PA2G4Q9UQ80 394 aaKnown RBP17.13■□□□□ 0.33
VPS29-201ENST00000360579 CAP2P40123 477 aa17.12■□□□□ 0.33
VPS29-201ENST00000360579 TIMM10P62072 90 aa17.12■□□□□ 0.33
VPS29-201ENST00000360579 TRMT44Q8IYL2 757 aaKnown RBP17.12■□□□□ 0.33
VPS29-201ENST00000360579 TDHQ8IZJ6 230 aa17.12■□□□□ 0.33
VPS29-201ENST00000360579 XAGE2Q96GT9 111 aa17.12■□□□□ 0.33
VPS29-201ENST00000360579 HERC5Q9UII4 1024 aaKnown RBP17.12■□□□□ 0.33
VPS29-201ENST00000360579 A0A1B0GUL7 405 aa17.11■□□□□ 0.33
VPS29-201ENST00000360579 FAM196BA6NMK8 535 aa17.11■□□□□ 0.33
VPS29-201ENST00000360579 IRX3P78415 501 aaPredicted RBP17.11■□□□□ 0.33
VPS29-201ENST00000360579 SOCS4Q8WXH5 440 aa17.11■□□□□ 0.33
VPS29-201ENST00000360579 STXBP5LQ9Y2K9 1186 aa17.11■□□□□ 0.33
VPS29-201ENST00000360579 LOC285556D6RIA3 1793 aa17.1■□□□□ 0.33
VPS29-201ENST00000360579 XRCC5P13010 732 aaKnown RBP17.1■□□□□ 0.33
VPS29-201ENST00000360579 MAGEA10P43363 369 aaPredicted RBP17.1■□□□□ 0.33
VPS29-201ENST00000360579 MAP3K21Q5TCX8 1036 aa17.1■□□□□ 0.33
VPS29-201ENST00000360579 NSUN4Q96CB9 384 aaKnown RBP17.1■□□□□ 0.33
VPS29-201ENST00000360579 NUDT12Q9BQG2 462 aa17.1■□□□□ 0.33
VPS29-201ENST00000360579 API5Q9BZZ5 524 aaKnown RBP17.1■□□□□ 0.33
VPS29-201ENST00000360579 TMOD4Q9NZQ9 345 aa17.1■□□□□ 0.33
VPS29-201ENST00000360579 PRKAR2AP13861 404 aaKnown RBP17.09■□□□□ 0.33
VPS29-201ENST00000360579 SYN1P17600 705 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 HOXA7P31268 230 aaPredicted RBP17.09■□□□□ 0.33
VPS29-201ENST00000360579 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 TRIM32Q13049 653 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 PDE3AQ14432 1141 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 GPRC5AQ8NFJ5 357 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 TRIB2Q92519 343 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 WDR18Q9BV38 432 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 UBE2OQ9C0C9 1292 aaKnown RBP17.09■□□□□ 0.33
VPS29-201ENST00000360579 DHX36Q9H2U1 1008 aaKnown RBP17.09■□□□□ 0.33
VPS29-201ENST00000360579 PI4KBQ9UBF8 816 aa17.09■□□□□ 0.33
VPS29-201ENST00000360579 DOCK3Q8IZD9 2030 aa17.08■□□□□ 0.33
VPS29-201ENST00000360579 ALPK3Q96L96 1907 aa17.08■□□□□ 0.33
VPS29-201ENST00000360579 ASNSP08243 561 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 CT47B1P0C2W7 299 aaPredicted RBP17.08■□□□□ 0.32
VPS29-201ENST00000360579 CYP2B6P20813 491 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 MAPK4P31152 587 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 BACE1P56817 501 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 GORABQ5T7V8 394 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 TEX11Q8IYF3 940 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 SPATA5Q8NB90 893 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 ZNF384Q8TF68 577 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 GTF3C2Q8WUA4 911 aaPredicted RBP17.08■□□□□ 0.32
VPS29-201ENST00000360579 NEUROD6Q96NK8 337 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 NOL10Q9BSC4 688 aaKnown RBP17.08■□□□□ 0.32
VPS29-201ENST00000360579 RAI14Q9P0K7 980 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 HMG20BQ9P0W2 317 aa17.08■□□□□ 0.32
VPS29-201ENST00000360579 C19orf81C9J6K1 198 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 SRGAP3O43295 1099 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 ZKSCAN1P17029 563 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms