RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 RBM17Q96I25 401 aaKnown RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 RABEP2Q9H5N1 569 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 EFCAB5A4FU69 1503 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 PSMD2Q13200 908 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 ANGPTL8Q6UXH0 198 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 XAGE3Q8WTP9 111 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 CCDC94Q9BW85 323 aaPredicted RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 HMGB1P09429 215 aaKnown RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 UBASH3AP57075 661 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 PHEXP78562 749 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 IFNL2Q8IZJ0 200 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 PPFIBP2Q8ND30 876 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 ZKSCAN3Q9BRR0 538 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 GUCA1BQ9UMX6 200 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 PPFIA2O75334 1257 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 KRT79Q5XKE5 535 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 RUFY3Q7L099 469 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 HACE1Q8IYU2 909 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 VPS18Q9P253 973 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 DBF4Q9UBU7 674 aaPredicted RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 SYF2O95926 243 aaKnown RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 NCAPH2Q6IBW4 605 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 SND1Q7KZF4 910 aaKnown RBP eCLIP10.86□□□□□ -0.67
CHD3-202ENST00000358181 TSPYL2Q9H2G4 693 aaPredicted RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 HACD3Q9P035 362 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 MYO1AQ9UBC5 1043 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 BAG5Q9UL15 447 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.86□□□□□ -0.67
CHD3-202ENST00000358181 RTCBQ9Y3I0 505 aaKnown RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 RXRAP19793 462 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 MMTAG2Q9BU76 263 aaKnown RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 SLITRK6Q9H5Y7 841 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 EPB41P11171 864 aaKnown RBP10.86□□□□□ -0.67
CHD3-202ENST00000358181 COPS6Q7L5N1 327 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 FIS1Q9Y3D6 152 aa10.86□□□□□ -0.67
CHD3-202ENST00000358181 KLF18A0A0U1RQI7 1052 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 CAPN15O75808 1086 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ATP11AP98196 1134 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 LIN9Q5TKA1 542 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 DCUN1D2Q6PH85 259 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 NKIRAS1Q9NYS0 192 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 MTRF1LQ9UGC7 380 aaKnown RBP10.85□□□□□ -0.67
CHD3-202ENST00000358181 DNMBPQ6XZF7 1577 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 TNFAIP3P21580 790 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 RNASELQ05823 741 aaKnown RBP10.85□□□□□ -0.67
CHD3-202ENST00000358181 CCDC102BQ68D86 513 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 LARGE2Q8N3Y3 721 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 NME8Q8N427 588 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ALG1Q9BT22 464 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 KRT23Q9C075 422 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 MTUS1Q9ULD2 1270 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 PCK1P35558 622 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ANO4Q32M45 955 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 MGARPQ8TDB4 240 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
CHD3-202ENST00000358181 NEUROG2Q9H2A3 272 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 PLEKHA4Q9H4M7 779 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ANAPC5Q9UJX4 755 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 RHOXF2BP0C7M4 288 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 CALML3P27482 149 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 SYKP43405 635 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 COG7P83436 770 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 RAD51AP2Q09MP3 1159 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 LRMPQ12912 555 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ANO6Q4KMQ2 910 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 HSP90AA5PQ58FG0 334 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 MAGEB6Q8N7X4 407 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 EHBP1Q8NDI1 1231 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 SRPK1Q96SB4 655 aaKnown RBP10.85□□□□□ -0.67
CHD3-202ENST00000358181 RHOXF2Q9BQY4 288 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 TRAIPQ9BWF2 469 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 CFAP65Q6ZU64 1925 aaKnown RBP10.85□□□□□ -0.67
CHD3-202ENST00000358181 NFATC2IPQ8NCF5 419 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 MEIS3Q99687 375 aa10.85□□□□□ -0.67
CHD3-202ENST00000358181 ZNF18P17022 549 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 TRIM50Q86XT4 487 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 ZNF449Q6P9G9 518 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 GPR161Q8N6U8 529 aaKnown RBP10.84□□□□□ -0.67
CHD3-202ENST00000358181 GLG1Q92896 1179 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 TBC1D8O95759 1140 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 CAPN12Q6ZSI9 719 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 PGBD1Q96JS3 809 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 TRAF1Q13077 416 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 KIAA1841Q6NSI8 718 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 ZNF608Q9ULD9 1512 aaPredicted RBP10.84□□□□□ -0.67
CHD3-202ENST00000358181 ZBED4O75132 1171 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 AFAP1L1Q8TED9 768 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 SCHIP1Q9P0W5 487 aaPredicted RBP10.84□□□□□ -0.67
CHD3-202ENST00000358181 CCNT1O60563 726 aaKnown RBP10.84□□□□□ -0.67
CHD3-202ENST00000358181 MCM4P33991 863 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 TBC1D9Q6ZT07 1266 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 PHLDB2Q86SQ0 1253 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 NCAPG2Q86XI2 1143 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 VCXQ9H320 206 aa10.84□□□□□ -0.67
CHD3-202ENST00000358181 NSMFQ6X4W1 530 aa10.83□□□□□ -0.68
CHD3-202ENST00000358181 PPP4R1Q8TF05 950 aa10.83□□□□□ -0.68
CHD3-202ENST00000358181 MCUR1Q96AQ8 359 aa10.83□□□□□ -0.68
CHD3-202ENST00000358181 SUCLA2Q9P2R7 463 aaPredicted RBP10.83□□□□□ -0.68
CHD3-202ENST00000358181 CTAGE15A4D2H0 777 aa10.83□□□□□ -0.68
CHD3-202ENST00000358181 CTAGE8P0CG41 777 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms