RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 IRAK4Q9NWZ3 460 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 CRYMQ14894 314 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 CTAGE3PQ8IX95 158 aa13.97□□□□□ -0.17
COL6A3-203ENST00000353578 COPG1Q9Y678 874 aaKnown RBP13.97□□□□□ -0.17
COL6A3-203ENST00000353578 CC2D2AQ9P2K1 1620 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 GCFC2P16383 781 aaKnown RBP13.96□□□□□ -0.17
COL6A3-203ENST00000353578 PLCD1P51178 756 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 CALR3Q96L12 384 aaKnown RBP13.96□□□□□ -0.17
COL6A3-203ENST00000353578 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 CCT5P48643 541 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 PDE4BQ07343 736 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 CUL1Q13616 776 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 MAP7D3Q8IWC1 876 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 NR1H3Q13133 447 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 SART1O43290 800 aaKnown RBP13.96□□□□□ -0.17
COL6A3-203ENST00000353578 DHX9Q08211 1270 aaKnown RBP13.96□□□□□ -0.17
COL6A3-203ENST00000353578 SYCP3Q8IZU3 236 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 ANGPTL3Q9Y5C1 460 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 USP16Q9Y5T5 823 aa13.96□□□□□ -0.17
COL6A3-203ENST00000353578 GNA14O95837 355 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 CXorf38Q8TB03 319 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 SERPINI1Q99574 410 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 IFIH1Q9BYX4 1025 aaKnown RBP13.96□□□□□ -0.18
COL6A3-203ENST00000353578 PPP2R5BQ15173 497 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 FGD4Q96M96 766 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 PIK3C2GO75747 1445 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 PDXDC1Q6P996 788 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 CCT6BQ92526 530 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 ZNF653Q96CK0 615 aa13.96□□□□□ -0.18
COL6A3-203ENST00000353578 GIPC1O14908 333 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 FANCCQ00597 558 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 CXorf56Q9H5V9 222 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 STK38LQ9Y2H1 464 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 CCDC25Q86WR0 208 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 ARHGEF18Q6ZSZ5 1173 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 HYOU1Q9Y4L1 999 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 FAM169AQ9Y6X4 670 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 LRRC8AQ8IWT6 810 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 PACSIN2Q9UNF0 486 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-203ENST00000353578 GCC2Q8IWJ2 1684 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 MINK1Q8N4C8 1332 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-203ENST00000353578 OCA2Q04671 838 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 SND1Q7KZF4 910 aaKnown RBP eCLIP13.95□□□□□ -0.18
COL6A3-203ENST00000353578 IFT88Q13099 833 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 SH2D4AQ9H788 454 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 CFTRP13569 1480 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 FAM96AQ9H5X1 160 aa13.95□□□□□ -0.18
COL6A3-203ENST00000353578 STXBP3O00186 592 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 KARSQ15046 597 aaKnown RBP13.94□□□□□ -0.18
COL6A3-203ENST00000353578 LRRC43Q8N309 656 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 CTTNBP2Q8WZ74 1663 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 GLE1Q53GS7 698 aaKnown RBP13.94□□□□□ -0.18
COL6A3-203ENST00000353578 AMOTL2Q9Y2J4 779 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 NLRP12P59046 1061 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 RPS6KA1Q15418 735 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 ABTB1Q969K4 478 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-203ENST00000353578 HDAC4P56524 1084 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 PPANQ9NQ55 473 aaKnown RBP13.94□□□□□ -0.18
COL6A3-203ENST00000353578 CDC23Q9UJX2 597 aa13.94□□□□□ -0.18
COL6A3-203ENST00000353578 KRT5P13647 590 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 MFSD6Q6ZSS7 791 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 GIMAP4Q9NUV9 329 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 TTC21BQ7Z4L5 1316 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 PARD3Q8TEW0 1356 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 LIN9Q5TKA1 542 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 ARHGAP31Q2M1Z3 1444 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 IQCA1LA6NCM1 817 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 EXOC6BQ9Y2D4 811 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 KDM2BQ8NHM5 1336 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 NAIPQ13075 1403 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 ADGBQ8N7X0 1667 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 SCAF11Q99590 1463 aaKnown RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 STRN3Q13033 797 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 HS2ST1Q7LGA3 356 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 NECTIN2Q92692 538 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 MYO10Q9HD67 2058 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 MAK16Q9BXY0 300 aaKnown RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 GLT8D2Q9H1C3 349 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 IFIT3O14879 490 aaKnown RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 APOEP02649 317 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 SDSP20132 328 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 EEF1DP29692 281 aaKnown RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 MORC4Q8TE76 937 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 MORC2Q9Y6X9 1032 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 HSPA6P17066 643 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 UBA5Q9GZZ9 404 aa13.93□□□□□ -0.18
COL6A3-203ENST00000353578 BZW2Q9Y6E2 419 aaKnown RBP13.93□□□□□ -0.18
COL6A3-203ENST00000353578 PALM3A6NDB9 673 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 CUTAO60888 179 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 PNMA6AP0CW24 399 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 KRR1Q13601 381 aaKnown RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 CCDC89Q8N998 374 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 GNAT2P19087 354 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 ASIC1P78348 528 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 TMEM67Q5HYA8 995 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 CRCPO75575 148 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 TTC4O95801 387 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 LONRF2Q1L5Z9 754 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 HNRNPCP07910 306 aaKnown RBP eCLIP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms