RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NECTIN1Q15223 517 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 FOXD4L5Q5VV16 416 aaPredicted RBP10.9□□□□□ -0.66
USP4-202ENST00000351842 HHIPL2Q6UWX4 724 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 KRT26Q7Z3Y9 468 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 NUP133Q8WUM0 1156 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 FOXD4L4Q8WXT5 416 aaPredicted RBP10.9□□□□□ -0.66
USP4-202ENST00000351842 MYO3BQ8WXR4 1341 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 LTBP3Q9NS15 1303 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 DLEC1Q9Y238 1755 aa10.9□□□□□ -0.67
USP4-202ENST00000351842 GLTPD2A6NH11 291 aa10.9□□□□□ -0.67
USP4-202ENST00000351842 PLCG2P16885 1265 aa10.9□□□□□ -0.67
USP4-202ENST00000351842 NBPF12Q5TAG4 269 aaPredicted RBP10.9□□□□□ -0.67
USP4-202ENST00000351842 USP48Q86UV5 1035 aa10.9□□□□□ -0.67
USP4-202ENST00000351842 NEK1Q96PY6 1258 aa10.9□□□□□ -0.67
USP4-202ENST00000351842 LTBP1Q14766 1721 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 GNAT2P19087 354 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 CCT2P78371 535 aaKnown RBP10.89□□□□□ -0.67
USP4-202ENST00000351842 TPRNQ4KMQ1 711 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 SULF1Q8IWU6 871 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 NECAB1Q8N987 351 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 BRF1Q92994 677 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 PKNOX2Q96KN3 472 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 DSCC1Q9BVC3 393 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 TACC3Q9Y6A5 838 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 HLA-DOAP06340 250 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 RASGRP2Q7LDG7 609 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 ZNF444Q8N0Y2 327 aaPredicted RBP10.89□□□□□ -0.67
USP4-202ENST00000351842 DCPSQ96C86 337 aaKnown RBP10.89□□□□□ -0.67
USP4-202ENST00000351842 NBPF3Q9H094 633 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 SENP2Q9HC62 589 aa10.89□□□□□ -0.67
USP4-202ENST00000351842 GAKO14976 1311 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 DEKP35659 375 aaKnown RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 CMTR1Q8N1G2 835 aaKnown RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 OSBPL5Q9H0X9 879 aaPredicted RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 GPBP1L1Q9HC44 474 aaPredicted RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 CYP46A1Q9Y6A2 500 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 POLR2AP24928 1970 aaKnown RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 IFIT3O14879 490 aaKnown RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 TSPY3P0CV98 308 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 TSPY8P0CW00 308 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 TFAP4Q01664 338 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 MICU3Q86XE3 530 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 ATP8A2Q9NTI2 1148 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 PDRG1Q9NUG6 133 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 PRC1O43663 620 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 APOBRQ0VD83 1088 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 FOXD4L6Q3SYB3 417 aaPredicted RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 FOXD4L3Q6VB84 417 aaPredicted RBP10.88□□□□□ -0.67
USP4-202ENST00000351842 Q6ZUG5 572 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 SH3BP5LQ7L8J4 393 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 UBAC1Q9BSL1 405 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP4-202ENST00000351842 SERPINB13Q9UIV8 391 aa10.88□□□□□ -0.67
USP4-202ENST00000351842 PDS5AQ29RF7 1337 aaKnown RBP10.87□□□□□ -0.67
USP4-202ENST00000351842 AKNAD1Q5T1N1 836 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 PAXIP1Q6ZW49 1069 aaPredicted RBP10.87□□□□□ -0.67
USP4-202ENST00000351842 CYB5R4Q7L1T6 521 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 KIF2CQ99661 725 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 ZSWIM5Q9P217 1185 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 ARAP2Q8WZ64 1704 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 MYH7P12883 1935 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 PDE4BQ07343 736 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 SPICE1Q8N0Z3 855 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 NCOA7Q8NI08 942 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 NCOA5Q9HCD5 579 aaKnown RBP10.87□□□□□ -0.67
USP4-202ENST00000351842 ADARB2Q9NS39 739 aaKnown RBP10.87□□□□□ -0.67
USP4-202ENST00000351842 SUGT1Q9Y2Z0 365 aa10.87□□□□□ -0.67
USP4-202ENST00000351842 SLC3A2P08195 630 aaKnown RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 RPS12P25398 132 aaKnown RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 CDK8P49336 464 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 AK2P54819 239 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 SPDYE2Q495Y8 402 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 TMEM67Q5HYA8 995 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 HSCBQ8IWL3 235 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 LRRC47Q8N1G4 583 aaKnown RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 DPF2Q92785 391 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 ZKSCAN4Q969J2 545 aaPredicted RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 VPS33BQ9H267 617 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 TAF1DQ9H5J8 278 aaPredicted RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 BRCA2P51587 3418 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 hCG_1642624A0A1W2PR95 340 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 PPP4CP60510 307 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 C12orf60Q5U649 245 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 TTC6Q86TZ1 520 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 ARPP21Q9UBL0 812 aaPredicted RBP10.86□□□□□ -0.67
USP4-202ENST00000351842 ST18O60284 1047 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 AKR1B1P15121 316 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 DGKZQ13574 1117 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 CPVLQ9H3G5 476 aa10.86□□□□□ -0.67
USP4-202ENST00000351842 SBF1O95248 1867 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 DHX16O60231 1041 aaKnown RBP10.85□□□□□ -0.67
USP4-202ENST00000351842 VEGFAP15692 232 aaPredicted RBP10.85□□□□□ -0.67
USP4-202ENST00000351842 DDX11Q96FC9 970 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 ERICH2A1L162 156 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 GH2P01242 217 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 YY1P25490 414 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 INPP5BP32019 993 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 TNNI2P48788 182 aa10.85□□□□□ -0.67
USP4-202ENST00000351842 FAM163AQ96GL9 167 aaPredicted RBP10.85□□□□□ -0.67
USP4-202ENST00000351842 ARFGEF1Q9Y6D6 1849 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms