RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 STX8Q9UNK0 236 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 LRMPQ12912 555 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 TGFBRAP1Q8WUH2 860 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 CPVLQ9H3G5 476 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 SALL1Q9NSC2 1324 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 CCDC186Q7Z3E2 898 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 FUCA2Q9BTY2 467 aa16.06■□□□□ 0.16
TRIM4-201ENST00000349062 WDHD1O75717 1129 aaPredicted RBP16.05■□□□□ 0.16
TRIM4-201ENST00000349062 FAM160A1Q05DH4 1040 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 IQCA1Q86XH1 822 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 CREBRFQ8IUR6 639 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 RNF41Q9H4P4 317 aaPredicted RBP16.05■□□□□ 0.16
TRIM4-201ENST00000349062 FAM217BQ9NTX9 383 aaPredicted RBP16.05■□□□□ 0.16
TRIM4-201ENST00000349062 GNAT2P19087 354 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 PICALMQ13492 652 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 MTERF4Q7Z6M4 381 aaKnown RBP16.05■□□□□ 0.16
TRIM4-201ENST00000349062 FANCBQ8NB91 859 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 MKNK2Q9HBH9 465 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 SPEF2Q9C093 1822 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 PLCH1Q4KWH8 1693 aa16.05■□□□□ 0.16
TRIM4-201ENST00000349062 G3V3G9 751 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 DCAF8Q5TAQ9 597 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 AKAP11Q9UKA4 1901 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 LAMA4Q16363 1823 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 LDHBP07195 334 aaKnown RBP16.04■□□□□ 0.16
TRIM4-201ENST00000349062 NSUN4Q96CB9 384 aaKnown RBP16.04■□□□□ 0.16
TRIM4-201ENST00000349062 CRNKL1Q9BZJ0 848 aaKnown RBP16.04■□□□□ 0.16
TRIM4-201ENST00000349062 SERPINB2P05120 415 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 PDIA4P13667 645 aaKnown RBP16.04■□□□□ 0.16
TRIM4-201ENST00000349062 GRIN1Q05586 938 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 CTR9Q6PD62 1173 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 ENAHQ8N8S7 591 aaPredicted RBP16.04■□□□□ 0.16
TRIM4-201ENST00000349062 VAT1LQ9HCJ6 419 aa16.04■□□□□ 0.16
TRIM4-201ENST00000349062 ZNF202O95125 648 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 PFKFB1P16118 471 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 CATIPQ7Z7H3 387 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 RIOK1Q9BRS2 568 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 CCDC94Q9BW85 323 aaPredicted RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 SLC3A2P08195 630 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 EIF6P56537 245 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 ARID5BQ14865 1188 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 NOM1Q5C9Z4 860 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 RASGRP2Q7LDG7 609 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 FNBP4Q8N3X1 1017 aaPredicted RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 STAMQ92783 540 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 MXD3Q9BW11 206 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 MYH3P11055 1940 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 SMC2O95347 1197 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 GOLGA8HP0CJ92 632 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 SNW1Q13573 536 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 PRR5LQ6MZQ0 368 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 GRAMD1CQ8IYS0 662 aa16.03■□□□□ 0.16
TRIM4-201ENST00000349062 SH3RF3Q8TEJ3 882 aaPredicted RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 NOL10Q9BSC4 688 aaKnown RBP16.03■□□□□ 0.16
TRIM4-201ENST00000349062 SYKP43405 635 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 ATP2B2Q01814 1243 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 PNOCQ13519 176 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 DPCR1Q3MIW9 517 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 MYRIPQ8NFW9 859 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 ZSCAN10Q96SZ4 725 aaPredicted RBP16.02■□□□□ 0.16
TRIM4-201ENST00000349062 AHDC1Q5TGY3 1603 aaPredicted RBP16.02■□□□□ 0.16
TRIM4-201ENST00000349062 CNTNAP4Q9C0A0 1308 aa16.02■□□□□ 0.16
TRIM4-201ENST00000349062 USP17L3A6NCW0 530 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 USP17L4A6NCW7 530 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 VEGFAP15692 232 aaPredicted RBP16.02■□□□□ 0.15
TRIM4-201ENST00000349062 DOK7Q18PE1 504 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 USP17L1Q7RTZ2 530 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 KCNG4Q8TDN1 519 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 ANKRD2Q9GZV1 360 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 RTEL1Q9NZ71 1219 aa16.02■□□□□ 0.15
TRIM4-201ENST00000349062 COL1A1P02452 1464 aaPredicted RBP16.02■□□□□ 0.15
TRIM4-201ENST00000349062 FOXN1O15353 648 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 LMOD1P29536 600 aaPredicted RBP16.01■□□□□ 0.15
TRIM4-201ENST00000349062 GPSM2P81274 684 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 TFAP4Q01664 338 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 NTRK3Q16288 839 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 UVSSAQ2YD98 709 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 HOMER1Q86YM7 354 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 STAG1Q8WVM7 1258 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 DCP1AQ9NPI6 582 aaPredicted RBP16.01■□□□□ 0.15
TRIM4-201ENST00000349062 CLIP2Q9UDT6 1046 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 PYCARDQ9ULZ3 195 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 ZNF827Q17R98 1081 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 PCDHB6Q9Y5E3 794 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 MROH7-TTC4A0A0A0MT08 1334 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 SLURP2P0DP57 97 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 ZNF174Q15697 407 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 ADALQ6DHV7 355 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 FBXO33Q7Z6M2 555 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 ZNF592Q92610 1267 aa16.01■□□□□ 0.15
TRIM4-201ENST00000349062 GPKOWQ92917 476 aaPredicted RBP eCLIP16.01■□□□□ 0.15
TRIM4-201ENST00000349062 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.01■□□□□ 0.15
TRIM4-201ENST00000349062 LTBP4Q8N2S1 1624 aa16■□□□□ 0.15
TRIM4-201ENST00000349062 STX1AQ16623 288 aa16■□□□□ 0.15
TRIM4-201ENST00000349062 BRAPQ7Z569 592 aa16■□□□□ 0.15
TRIM4-201ENST00000349062 SMAP1Q8IYB5 467 aaPredicted RBP16■□□□□ 0.15
TRIM4-201ENST00000349062 ZNF622Q969S3 477 aaKnown RBP eCLIP16■□□□□ 0.153e-11■■■■□ 20.1
TRIM4-201ENST00000349062 GTF2IP78347 998 aa16■□□□□ 0.15
TRIM4-201ENST00000349062 RASGRP4Q8TDF6 673 aa16■□□□□ 0.15
TRIM4-201ENST00000349062 NWD2Q9ULI1 1742 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms